Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 4842.7 2476 100.0
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 4271.1 2497 88.1
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 4210.2 2492 87.0
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 4181.7 2489 86.4
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 4169.4 2494 86.4
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 4151.3 2511 85.6
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 4146.3 2490 85.5
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 4132.8 2484 85.3
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 4061.5 2230 93.1
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 4045.0 2502 84.4
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3725.3 2548 75.9
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3695.6 2544 75.3
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3665.5 2531 74.6
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3660.9 2542 75.1
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3645.5 2535 74.6
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3642.4 2571 73.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3630.5 2536 75.1
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3623.6 2560 73.8
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3612.8 2544 74.3
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3609.7 2550 73.5
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3607.8 2543 74.5
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3606.6 2537 74.3
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3605.5 2531 74.2
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3598.9 2513 74.4
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3598.1 2554 73.6
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3596.6 2549 73.8
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3566.9 2548 72.6
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3547.7 2557 72.1
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3522.3 2578 71.3
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3508.4 2506 72.3
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3482.2 2537 72.1
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3469.1 2603 70.7
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3461.8 2541 70.9
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3410.9 2546 69.9
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3403.6 2533 70.1
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3377.8 2518 70.2
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3361.2 2537 68.6
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3343.5 2828 64.0
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3320.0 2517 68.5
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3302.3 2547 67.6
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3275.0 2556 68.0
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3263.4 2514 67.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3256.1 2553 67.4
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3213.3 2561 66.2
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3204.8 2358 70.5
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3204.1 2522 66.9
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3202.1 2562 66.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3192.1 2526 66.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 3186.7 1722 94.3
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3179.0 2521 66.6
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3174.0 2531 66.2
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3167.9 2586 65.8
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3159.8 2533 65.7
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3147.5 2532 66.4
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3146.3 2514 65.4
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3144.4 2560 65.4
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3116.3 2501 66.1
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3112.8 2504 65.8
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3100.1 2536 65.2
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3096.6 2534 65.2
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3083.1 2526 65.0
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3062.7 2526 64.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3057.7 2411 66.9
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3051.9 2550 63.5
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3024.6 2565 63.5
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3020.3 2526 63.8
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3018.0 2086 75.4
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2941.4 1889 80.0
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2932.9 2236 69.0
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2919.0 2590 62.0
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2847.0 1871 78.1
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2839.7 2035 72.1
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2620.9 1643 81.3
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2431.8 1828 69.6
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2379.4 2276 57.1
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2262.3 1723 69.2
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2255.7 1775 67.9
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2236.5 1741 68.4
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2100.9 2690 46.7
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2072.4 1692 64.6
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2021.9 2354 48.8
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1743.0 1177 76.4
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1704.5 1420 65.1
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1701.4 1187 73.3
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1699.5 1145 76.9
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1699.1 1098 80.2
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1682.9 2536 41.8
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1577.0 1152 72.3
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1560.0 1143 72.3
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1516.9 2537 38.9
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1467.2 2360 39.2
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1438.3 1587 51.4
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1435.2 853 84.5
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1426.4 1182 64.6
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1414.8 1479 53.4
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1368.2 1173 63.0
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1261.1 1462 49.4
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1250.3 745 84.4
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1236.5 900 69.3
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.6e-307 1059.3 672 80.2
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 2.2e-301 1040.4 609 86.7
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 8.4e-285 985.3 1111 50.1
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 3.7e-264 916.8 630 75.6
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.9e-260 904.4 989 52.1
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 8.4e-253 879.0 1047 49.3
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 5.9e-246 856.3 909 53.9
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.7e-221 775.0 879 50.6
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.0e-202 712.6 496 73.2
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.3e-200 705.7 731 55.5
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.4e-199 701.4 843 50.8
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 3.0e-189 667.9 858 45.7
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 9.5e-180 636.3 613 60.2
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.2e-179 636.0 384 82.0
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 4.9e-176 624.0 674 51.8
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.1e-175 620.9 652 52.5
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.1e-172 612.8 642 52.6
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 3.4e-169 601.3 489 61.8
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 8.4e-160 570.1 556 56.3
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 6.6e-157 560.5 477 62.1
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.9e-140 505.8 502 56.8
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 4.1e-130 471.5 481 53.4
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.1e-118 432.6 514 46.5
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 1.1e-114 420.2 264 76.9
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 9.7e-108 397.1 239 85.8
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 4.1e-98 365.2 347 55.3
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 8.0e-94 350.9 180 93.9
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.3e-93 349.4 204 87.3
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 3.4e-92 345.5 249 68.3
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 6.8e-85 321.2 180 84.4
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 3.9e-80 305.4 220 71.8
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 7.3e-79 301.2 267 62.5
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 1.3e-75 290.4 151 94.7
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 7.8e-73 281.2 158 84.2
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 1.2e-68 267.3 354 47.5
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.2e-62 247.3 316 46.2
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.5e-55 223.0 337 42.1
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 9.6e-55 221.1 1930 23.8
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 2.1e-54 219.9 277 48.7
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 2.8e-54 219.5 278 47.5
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 7.1e-50 204.9 305 41.3
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 1.2e-44 187.6 251 45.4
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 4.9e-43 182.2 287 42.5
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.6e-38 167.2 116 74.1
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 4.8e-38 165.6 105 77.1
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.8e-37 163.7 116 75.0
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 6.7e-32 145.2 143 53.1
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 5.6e-31 142.1 139 56.8
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 1.5e-28 134.0 100 69.0
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 4.9e-27 129.0 101 69.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 4.9e-27 129.0 101 69.3
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.0e-24 121.3 204 42.2
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.5e-23 117.5 183 45.9
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 3.3e-23 116.3 142 45.8
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 3.4e-20 106.3 104 60.6
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 4.5e-20 105.9 89 60.7
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 7.6e-20 105.1 129 53.5
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 1.7e-19 104.0 120 47.5
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.1e-18 101.3 119 47.1
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.5e-17 96.3 123 54.5
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.1e-15 91.3 67 68.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.1e-15 91.3 67 68.7
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.9e-15 90.5 76 61.8
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 3.3e-15 89.7 51 90.2
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 9.7e-15 88.2 73 64.4
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 3.7e-14 86.3 47 87.2
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 1.4e-13 84.3 141 43.3
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 4.5e-12 79.3 153 41.2
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.2e-11 77.0 48 79.2
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 2.9e-11 76.6 77 51.9
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.5e-11 75.1 79 60.8
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 4.2e-10 72.8 100 50.0
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.7e-09 70.1 57 61.4
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.0e-08 68.2 59 61.0
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 2.3e-08 67.0 54 63.0
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 5.1e-08 65.9 75 54.7
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-07 64.3 48 79.2
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.3e-07 63.2 70 51.4


User provided reference genes

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