Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 5.9e-77 290.8 150 100.0
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.1e-17 94.0 173 40.5
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 6.9e-17 91.3 173 41.0
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 2.6e-16 89.4 165 41.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.0e-15 87.4 178 36.5
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 5.5e-14 81.6 159 42.1
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.6e-13 80.1 181 35.4
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 2.7e-13 79.3 167 35.3
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 2.7e-13 79.3 182 34.6
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 6.1e-13 78.2 181 36.5
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.0e-12 77.4 179 36.3
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.0e-12 77.4 179 38.5
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.4e-12 77.0 170 35.3
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-12 76.6 151 37.7
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.3e-12 76.3 183 36.6
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 2.3e-12 76.3 152 35.5
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-12 75.5 167 36.5
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 3.9e-12 75.5 174 33.3
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 5.1e-12 75.1 181 33.7
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.7e-12 74.7 167 34.7
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 6.7e-12 74.7 91 52.7
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 8.8e-12 74.3 180 33.9
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 8.8e-12 74.3 168 36.3
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 8.8e-12 74.3 185 32.4
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 8.8e-12 74.3 176 35.8
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.9e-11 73.2 88 50.0
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 1.9e-11 73.2 176 34.7
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-11 73.2 167 35.9
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.9e-11 73.2 158 34.8
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 2.5e-11 72.8 175 34.3
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 3.3e-11 72.4 129 38.0
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 3.3e-11 72.4 129 38.0
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.3e-11 72.0 181 32.6
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.7e-11 71.6 182 36.8
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 5.7e-11 71.6 157 34.4
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.7e-11 70.9 167 35.3
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.3e-10 70.5 181 32.6
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-10 70.5 167 35.3
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-10 70.5 167 33.5
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 1.3e-10 70.5 176 31.8
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.3e-10 70.5 170 34.1
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.7e-10 70.1 159 34.6
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.7e-10 70.1 159 34.6
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-10 70.1 167 35.3
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 1.7e-10 70.1 183 35.0
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-10 69.3 181 32.6
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 3.7e-10 68.9 137 36.5
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 3.7e-10 68.9 152 33.6
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-10 68.9 150 32.7
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-10 68.9 167 33.5
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 3.7e-10 68.9 175 30.9
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.8e-10 68.6 151 35.1
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 4.8e-10 68.6 182 36.3
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.8e-10 68.6 182 36.3
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.8e-10 68.6 167 35.3
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 4.8e-10 68.6 154 35.1
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 6.3e-10 68.2 147 34.0
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 6.3e-10 68.2 157 35.0
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 6.3e-10 68.2 157 35.0
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.3e-10 68.2 182 35.7
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.3e-10 68.2 91 44.0
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 8.2e-10 67.8 158 36.1
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.4e-09 67.0 157 33.1
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-09 66.6 142 34.5
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-09 66.2 142 33.8
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 2.4e-09 66.2 142 33.8
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 2.4e-09 66.2 87 50.6
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 3.1e-09 65.9 91 42.9
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 4.1e-09 65.5 152 30.9
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 4.1e-09 65.5 184 32.1
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 4.1e-09 65.5 189 30.2
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 4.1e-09 65.5 189 30.2
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 5.3e-09 65.1 186 29.6
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.9e-09 64.7 182 34.1
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 9.1e-09 64.3 96 42.7
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.0e-08 63.2 168 34.5
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.0e-08 63.2 109 34.9
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 2.0e-08 63.2 80 50.0
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 2.6e-08 62.8 96 41.7
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 2.6e-08 62.8 185 33.5
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 3.4e-08 62.4 87 46.0
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 3.4e-08 62.4 158 34.8
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 4.5e-08 62.0 105 34.3
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 4.5e-08 62.0 159 34.6
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 5.9e-08 61.6 142 32.4
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 5.9e-08 61.6 159 33.3
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 5.9e-08 61.6 98 40.8
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 5.9e-08 61.6 160 30.6
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 5.9e-08 61.6 79 41.8
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 7.7e-08 61.2 159 33.3
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 7.7e-08 61.2 159 33.3
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.0e-07 60.8 163 33.1
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.0e-07 60.8 136 34.6
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-07 60.8 106 35.8
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.7e-07 60.1 141 34.8
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.7e-07 60.1 144 32.6
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.7e-07 60.1 143 32.9
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.2e-07 59.7 87 40.2
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.2e-07 59.7 87 40.2
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.2e-07 59.7 207 30.4
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.9e-07 59.3 151 30.5
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.9e-07 59.3 157 31.8
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.9e-07 59.3 155 31.0
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 2.9e-07 59.3 107 40.2
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 6.5e-07 58.2 137 32.8
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 6.5e-07 58.2 137 32.8
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 6.5e-07 58.2 154 31.8
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 8.5e-07 57.8 156 29.5
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 1.4e-06 57.0 52 50.0
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.4e-06 57.0 172 30.2
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.9e-06 56.6 164 31.7
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-06 56.6 150 33.3
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.9e-06 56.6 141 33.3
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.9e-06 56.6 183 31.1
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.9e-06 56.6 148 31.1
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.9e-06 56.6 187 31.0
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 2.5e-06 56.2 136 33.8
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 2.5e-06 56.2 96 39.6
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 3.2e-06 55.8 138 32.6
Glyma.06G073500 Glycine max HOM05D033454 ORTHO05D215405 3.2e-06 55.8 107 40.2
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 4.2e-06 55.5 132 33.3
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 4.2e-06 55.5 162 29.6
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 5.5e-06 55.1 91 37.4
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 5.5e-06 55.1 101 40.6
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.5e-06 55.1 119 37.0
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 9.4e-06 54.3 105 31.4


User provided reference genes

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