Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 5.6e-80 300.8 147 100.0
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 6.0e-66 254.2 151 84.1
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 6.9e-54 214.2 148 76.4
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 9.7e-40 167.2 122 69.7
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 1.2e-37 160.2 161 56.5
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 1.0e-36 157.1 165 58.8
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 6.1e-34 147.9 161 53.4
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 2.3e-33 146.0 159 56.6
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.2e-32 143.7 159 56.6
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 1.5e-32 143.3 158 52.5
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 7.0e-30 134.4 171 50.9
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.4e-25 120.2 154 44.8
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 2.6e-24 115.9 150 48.7
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 7.5e-24 114.4 149 45.0
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 3.1e-22 109.0 147 47.6
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 3.1e-22 109.0 160 48.1
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 1.2e-21 107.1 147 42.9
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 2.7e-21 105.9 148 47.3
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 3.5e-21 105.5 147 48.3
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 7.7e-21 104.4 151 42.4
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 1.0e-20 104.0 148 44.6
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.3e-20 103.6 148 42.6
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 1.3e-20 103.6 152 46.7
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.3e-20 103.6 157 37.6
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 1.3e-20 103.6 149 47.0
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.9e-20 102.4 150 44.7
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.6e-20 101.3 150 44.7
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 8.6e-20 100.9 151 42.4
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.5e-19 100.1 148 42.6
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.9e-19 99.8 150 44.7
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 2.5e-19 99.4 150 44.7
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.3e-19 99.0 150 44.7
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 3.3e-19 99.0 142 45.8
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 4.2e-19 98.6 150 40.7
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 5.5e-19 98.2 144 40.3
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 5.5e-19 98.2 152 43.4
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 7.2e-19 97.8 150 43.3
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 9.5e-19 97.4 150 41.3
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 9.5e-19 97.4 141 41.8
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 1.2e-18 97.1 146 42.5
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 1.2e-18 97.1 150 44.0
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 1.6e-18 96.7 153 43.1
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 3.6e-18 95.5 132 43.2
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 4.7e-18 95.1 158 39.9
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 4.7e-18 95.1 151 43.7
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 6.1e-18 94.7 118 47.5
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 8.0e-18 94.4 153 43.8
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 1.0e-17 94.0 68 69.1
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 1.8e-17 93.2 149 39.6
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 3.0e-17 92.4 149 43.6
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 3.0e-17 92.4 150 43.3
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 5.2e-17 91.7 131 44.3
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 6.8e-17 91.3 115 44.3
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 1.2e-16 90.5 154 40.9
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 1.5e-16 90.1 156 38.5
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.5e-16 90.1 150 38.7
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 2.6e-16 89.4 156 41.0
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 4.4e-16 88.6 153 38.6
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 7.5e-16 87.8 149 39.6
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 2.2e-15 86.3 159 39.0
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 2.8e-15 85.9 115 43.5
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 3.7e-15 85.5 160 38.8
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 4.9e-15 85.1 146 40.4
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 8.3e-15 84.3 156 40.4
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.1e-14 84.0 149 36.2
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.1e-14 84.0 149 36.2
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.1e-14 84.0 149 36.2
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 1.8e-14 83.2 150 39.3
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 1.8e-14 83.2 148 38.5
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 2.4e-14 82.8 149 35.6
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 5.4e-14 81.6 149 34.9
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.2e-13 80.5 149 34.9
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.6e-13 80.1 146 38.4
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 2.7e-13 79.3 150 36.0
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 2.7e-13 79.3 94 44.7
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 3.5e-13 79.0 142 40.1
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 3.5e-13 79.0 106 44.3
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 4.5e-13 78.6 147 33.3
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 5.9e-13 78.2 157 35.7
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 1.0e-12 77.4 151 35.1
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 1.7e-12 76.6 63 63.5
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 2.9e-12 75.9 145 35.9
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.8e-12 75.5 117 44.4
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 6.6e-12 74.7 134 37.3
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 1.1e-11 73.9 145 36.6
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.1e-11 73.9 113 36.3
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 2.5e-11 72.8 86 47.7
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 3.3e-11 72.4 153 37.9
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 3.3e-11 72.4 154 37.7
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.2e-10 70.5 121 37.2
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 2.1e-10 69.7 154 33.8
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 3.6e-10 68.9 118 38.1
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 3.6e-10 68.9 133 36.1
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 4.7e-10 68.6 72 43.1
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.8e-09 66.6 161 34.8
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 5.2e-09 65.1 147 33.3
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 2.6e-08 62.8 133 36.1
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 3.4e-08 62.4 116 35.3
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 1.3e-07 60.5 113 37.2
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 4.1e-06 55.5 32 71.9
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 4.1e-06 55.5 112 35.7


User provided reference genes

Program Settings