Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G071600 Glycine max HOM05D007351 ORTHO05D009386 2.8e-111 405.2 193 100.0
Glyma.04G069700 Glycine max HOM05D007351 ORTHO05D009386 1.0e-105 386.7 195 95.4
Phvul.009G096100 Phaseolus vulgaris HOM05D007351 ORTHO05D009386 2.9e-100 368.6 193 90.7
arahy.Tifrunner.gnm1.ann1.C4YKET Arachis hypogaea HOM05D007351 ORTHO05D009386 4.3e-96 354.8 201 85.1
Lj1g0014043 Lotus japonicus HOM05D007351 ORTHO05D009386 1.3e-95 353.2 194 88.1
Psat5g027160 Pisum sativum HOM05D007351 ORTHO05D009386 1.2e-93 346.7 193 86.0
Ca_15711_v3 Cicer arietinum L. HOM05D007351 ORTHO05D009386 3.4e-93 345.1 195 84.6
Lalb_Chr23g0268831 Lupinus albus HOM05D007351 ORTHO05D009386 3.4e-93 345.1 196 84.7
Medtr3g107860 Medicago truncatula HOM05D007351 ORTHO05D009386 7.6e-93 344.0 193 83.4
arahy.Tifrunner.gnm1.ann1.8MNE4Q Arachis hypogaea HOM05D007351 ORTHO05D009386 1.7e-92 342.8 222 77.0
TPR.G27335 Trifolium pratense HOM05D007351 ORTHO05D009386 2.7e-90 335.5 191 84.3
VMungo1309G2796 Vigna mungo HOM05D007351 ORTHO05D009386 2.7e-90 335.5 205 82.4
FvH4_2g29770 Fragaria vesca HOM05D007351 ORTHO05D009386 2.3e-89 332.4 193 81.9
FAN27G2935 Fragaria x ananassa HOM05D007351 ORTHO05D009386 2.3e-89 332.4 193 81.3
FAN24G0983 Fragaria x ananassa HOM05D007351 ORTHO05D009386 3.0e-89 332.0 193 81.9
FAN15G3188 Fragaria x ananassa HOM05D007351 ORTHO05D009386 8.7e-89 330.5 193 81.3
Lj8A616G46 Lonicera japonica HOM05D007351 ORTHO05D009386 1.1e-86 323.6 202 77.7
MD08G1141900 Malus domestica HOM05D007351 ORTHO05D009386 1.8e-86 322.8 195 81.5
RcHm_v2.0_Chr6g0298791 Rosa chinensis HOM05D007351 ORTHO05D009386 5.3e-86 321.2 209 75.6
CiPaw.08G014100 Carya illinoinensis HOM05D007351 ORTHO05D009386 6.9e-86 320.9 171 86.5
Prupe.1G471900 Prunus persica HOM05D007351 ORTHO05D009386 9.0e-86 320.5 170 86.5
Nn2g11909 Nelumbo nucifera HOM05D007351 ORTHO05D009386 7.6e-85 317.4 171 84.8
Sabra06G0194800 Salix brachista HOM05D007351 ORTHO05D009386 7.6e-85 317.4 170 85.3
CSS0046405 Camellia sinensis var. sinensis HOM05D007351 ORTHO05D009386 1.3e-84 316.6 171 84.8
Manes.16G118400 Manihot esculenta HOM05D007351 ORTHO05D009386 1.7e-84 316.2 208 74.5
Potri.006G249000 Populus trichocarpa HOM05D007351 ORTHO05D009386 1.7e-84 316.2 188 79.3
Eucgr.C01805 Eucalyptus grandis HOM05D007351 ORTHO05D009386 3.8e-84 315.1 202 75.7
Actinidia15698 Actinidia chinensis HOM05D007351 ORTHO05D009386 1.4e-83 313.2 198 75.8
MSTRG.11754 Avicennia marina HOM05D007351 ORTHO05D009386 1.4e-83 313.2 194 77.3
Atru.chr7.2359 Acer truncatum HOM05D007351 ORTHO05D009386 5.5e-83 311.2 197 77.7
Migut.A00300 Erythranthe guttata HOM05D007351 ORTHO05D009386 9.3e-83 310.5 194 77.3
MBI04_g00950_MAGBIO Magnolia biondii HOM05D007351 ORTHO05D009386 9.3e-83 310.5 173 81.5
TAR625G1337 Trochodendron aralioides HOM05D007351 ORTHO05D009386 9.3e-83 310.5 198 76.3
TWI34G1290 Tripterygium wilfordii HOM05D007351 ORTHO05D009386 2.1e-82 309.3 171 82.5
GSVIVG01035772001 Vitis vinifera HOM05D007351 ORTHO05D009386 2.7e-82 308.9 171 82.5
Thecc.09G147600 Theobroma cacao HOM05D007351 ORTHO05D009386 3.5e-82 308.5 166 84.9
Lsat_1_v5_gn_6_21681 Lactuca sativa HOM05D007351 ORTHO05D009386 4.6e-82 308.1 194 77.3
AT2G25605 Arabidopsis thaliana HOM05D007351 ORTHO05D009386 3.0e-81 305.4 201 72.1
PSO170G0157 Papaver somniferum HOM05D007351 ORTHO05D009386 3.0e-81 305.4 187 76.5
CARHR115710 Cardamine hirsuta HOM05D007351 ORTHO05D009386 3.9e-81 305.1 200 73.5
PSO017G1621 Papaver somniferum HOM05D007351 ORTHO05D009386 3.9e-81 305.1 194 73.7
Carub.0004s0533 Capsella rubella HOM05D007351 ORTHO05D009386 6.7e-81 304.3 167 80.8
Ciclev10009550m.g Citrus clementina HOM05D007351 ORTHO05D009386 6.7e-81 304.3 200 74.5
Peaxi162Scf00251g01128 Petunia axillaris HOM05D007351 ORTHO05D009386 8.7e-81 303.9 193 74.6
COL.COLO4_24001 Corchorus olitorius HOM05D007351 ORTHO05D009386 1.1e-80 303.5 172 79.7
A04p19820 Brassica napus HOM05D007351 ORTHO05D009386 1.5e-80 303.1 201 72.1
BcaC02g08337 Brassica carinata HOM05D007351 ORTHO05D009386 1.9e-80 302.8 166 81.3
C04p55560 Brassica napus HOM05D007351 ORTHO05D009386 1.9e-80 302.8 166 81.3
BolC4t27080H Brassica oleracea HOM05D007351 ORTHO05D009386 1.9e-80 302.8 166 81.3
BraA04t17570Z Brassica rapa HOM05D007351 ORTHO05D009386 1.9e-80 302.8 166 81.3
Cc11_g01660 Coffea canephora HOM05D007351 ORTHO05D009386 1.9e-80 302.8 195 74.9
AL4G17070 Arabidopsis lyrata HOM05D007351 ORTHO05D009386 2.5e-80 302.4 176 77.3
Thhalv10000330m.g Eutrema salsugineum HOM05D007351 ORTHO05D009386 4.3e-80 301.6 167 80.2
Aa31sc586G10 Aethionema arabicum HOM05D007351 ORTHO05D009386 7.4e-80 300.8 199 71.9
BcaB06g28079 Brassica carinata HOM05D007351 ORTHO05D009386 9.7e-80 300.4 201 71.1
Hma1.2p1_0000F.1_g000940 Hydrangea macrophylla HOM05D007351 ORTHO05D009386 9.7e-80 300.4 197 72.6
HanXRQChr13g0402411 Helianthus annuus HOM05D007351 ORTHO05D009386 1.6e-79 299.7 194 73.7
Gorai.004G110800 Gossypium raimondii HOM05D007351 ORTHO05D009386 2.8e-79 298.9 171 79.5
EL10Ac2g02569 Beta vulgaris HOM05D007351 ORTHO05D009386 8.2e-79 297.4 203 69.5
PGSC0003DMG400007382 Solanum tuberosum HOM05D007351 ORTHO05D009386 8.2e-79 297.4 198 72.2
Cpa.g.sc91.32 Carica papaya HOM05D007351 ORTHO05D009386 1.4e-78 296.6 212 70.3
Sc06g0000580 Simmondsia chinensis HOM05D007351 ORTHO05D009386 2.4e-78 295.8 173 76.3
Solyc08g067430.4 Solanum lycopersicum HOM05D007351 ORTHO05D009386 6.9e-78 294.3 198 71.2
ECA233G0102 Erigeron canadensis HOM05D007351 ORTHO05D009386 9.0e-78 293.9 186 72.0
SGA_v2.0_scaffold448G51771 Striga asiatica HOM05D007351 ORTHO05D009386 1.2e-77 293.5 188 75.5
THA.LOC104804500 Tarenaya hassleriana HOM05D007351 ORTHO05D009386 1.2e-77 293.5 167 80.2
Hund03010 Selenicereus undatus HOM05D007351 ORTHO05D009386 2.0e-77 292.7 171 76.6
MELO3C003678.2 Cucumis melo HOM05D007351 ORTHO05D009386 2.6e-77 292.4 205 67.8
Gohir.A08G090000 Gossypium hirsutum HOM05D007351 ORTHO05D009386 2.6e-77 292.4 165 80.6
Nitab4.5_0000508g0220 Nicotiana tabacum HOM05D007351 ORTHO05D009386 3.4e-77 292.0 197 70.6
AUR62032351 Chenopodium quinoa HOM05D007351 ORTHO05D009386 5.9e-77 291.2 211 66.8
Sed0005695 Sechium edule HOM05D007351 ORTHO05D009386 5.9e-77 291.2 185 72.4
Aqoxy7G02003 Aquilegia oxysepala HOM05D007351 ORTHO05D009386 2.9e-76 288.9 184 73.4
Os05g0574700 Oryza sativa ssp. japonica HOM05D007351 ORTHO05D009386 5.0e-76 288.1 174 78.7
Rhsim07G0150700 Rhododendron simsii HOM05D007351 ORTHO05D009386 1.9e-75 286.2 190 70.5
Nitab4.5_0002339g0070 Nicotiana tabacum HOM05D007351 ORTHO05D009386 2.5e-75 285.8 200 69.5
unitig_32.g11667 Utricularia gibba HOM05D007351 ORTHO05D009386 7.2e-75 284.3 195 71.8
vmacro05202 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 2.1e-74 282.7 152 84.9
Sopen08g021360 Solanum pennellii HOM05D007351 ORTHO05D009386 6.1e-74 281.2 198 69.2
CDE06G1133 Ceratophyllum demersum HOM05D007351 ORTHO05D009386 7.9e-74 280.8 194 69.6
ATR0680G179 Amborella trichopoda HOM05D007351 ORTHO05D009386 1.1e-70 270.4 177 71.8
QL12p031742 Quercus lobata HOM05D007351 ORTHO05D009386 1.4e-67 260.0 161 78.9
AUR62041846 Chenopodium quinoa HOM05D007351 ORTHO05D009386 9.4e-67 257.3 163 73.6
SEGI_27006 Sequoiadendron giganteum HOM05D007351 ORTHO05D009386 1.2e-66 256.9 177 67.8
Duzib150G1343 Durio zibethinus HOM05D007351 ORTHO05D009386 3.6e-66 255.4 140 84.3
PGR031G1798 Punica granatum HOM05D007351 ORTHO05D009386 7.9e-66 254.2 182 69.8
Sp4g05090 Schrenkiella parvula HOM05D007351 ORTHO05D009386 1.4e-65 253.4 140 80.7
Gohir.D08G102800 Gossypium hirsutum HOM05D007351 ORTHO05D009386 2.6e-64 249.2 146 79.5
CsaV3_3G046600 Cucumis sativus L. HOM05D007351 ORTHO05D009386 3.3e-64 248.8 141 78.7
Mapoly0036s0071 Marchantia polymorpha HOM05D007351 ORTHO05D009386 3.3e-64 248.8 174 66.1
DCAR_003046 Daucus carota HOM05D007351 ORTHO05D009386 3.7e-63 245.4 148 79.1
Zm00001eb344390 Zea mays HOM05D007351 ORTHO05D009386 2.4e-62 242.7 145 76.6
CANSAT11G2455 Cannabis sativa HOM05D007351 ORTHO05D009386 9.1e-62 240.7 181 65.2
Pp3c17_16830 Physcomitrium patens HOM05D007351 ORTHO05D009386 1.4e-57 226.9 173 61.8
SMO269G0024 Selaginella moellendorffii HOM05D007351 ORTHO05D009386 2.3e-57 226.1 152 66.4
Oeu045191.1 Olea europaea HOM05D007351 ORTHO05D009386 2.2e-55 219.5 161 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1243 Anthoceros agrestis HOM05D007351 ORTHO05D009386 1.1e-54 217.2 152 66.4
Haze_21592 Corylus avellana HOM05D007351 ORTHO05D009386 5.3e-54 214.9 111 88.3
CBR_g40414 Chara braunii HOM05D007351 ORTHO05D009386 2.8e-47 192.6 160 56.2
CANSAT54G2502 Cannabis sativa HOM05D007351 ORTHO05D009386 5.9e-45 184.9 152 61.2
Cre17.g746897 Chlamydomonas reinhardtii HOM05D007351 ORTHO05D009386 2.8e-31 139.4 134 47.8
vmacro05206 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 2.3e-17 93.2 168 38.7
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 1.6e-10 70.5 37 81.1
Pp3c16_22900 Physcomitrium patens HOM05D033550 ORTHO05D017832 2.1e-10 70.1 133 34.6
Mapoly0006s0206 Marchantia polymorpha HOM05D017363 ORTHO05D018319 4.9e-07 58.9 179 22.9
Cre16.g683300 Chlamydomonas reinhardtii HOM05D027270 ORTHO05D017832 4.1e-06 55.8 137 31.4
SEGI_25541 Sequoiadendron giganteum HOM05D007351 ORTHO05D017832 9.2e-06 54.7 137 31.4


User provided reference genes

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