Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 0.0e+00 1087.8 521 100.0
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 2.6e-289 998.0 521 91.9
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 2.3e-277 958.4 521 88.5
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 4.1e-266 921.0 493 88.8
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 6.5e-248 860.5 501 80.8
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 8.5e-248 860.1 497 82.3
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 3.0e-245 851.7 498 80.1
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 1.8e-242 842.4 508 78.7
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 3.1e-242 841.6 507 79.1
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 3.5e-241 838.2 500 78.2
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 2.1e-238 828.9 496 78.8
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 3.4e-228 795.0 510 72.7
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 5.4e-226 787.7 508 72.6
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 1.3e-224 783.1 512 70.1
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.5e-223 779.6 498 71.5
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 1.9e-223 779.2 505 71.9
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 3.3e-223 778.5 498 71.3
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 2.8e-222 775.4 502 71.3
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 5.2e-221 771.2 511 70.8
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 2.6e-220 768.8 502 71.5
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 4.4e-220 768.1 507 70.8
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 1.3e-219 766.5 504 70.2
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 2.2e-219 765.8 501 71.7
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 3.7e-219 765.0 510 70.8
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 6.4e-219 764.2 504 70.6
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 8.3e-219 763.8 495 70.7
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 1.9e-218 762.7 494 71.3
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 9.2e-218 760.4 504 69.8
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 7.8e-217 757.3 503 71.8
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 1.7e-216 756.1 494 72.1
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 3.9e-216 755.0 509 69.2
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 6.6e-216 754.2 509 70.5
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 8.6e-216 753.8 509 69.0
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 1.6e-214 749.6 495 69.7
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 2.8e-214 748.8 502 69.3
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 8.1e-214 747.3 491 71.3
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 8.1e-214 747.3 495 69.5
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 4.0e-213 745.0 504 69.4
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 4.0e-213 745.0 491 71.9
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 5.8e-212 741.1 505 68.5
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 5.8e-212 741.1 502 69.5
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 7.5e-212 740.7 510 68.4
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 7.5e-212 740.7 502 68.9
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 4.9e-211 738.0 509 67.8
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 8.3e-211 737.3 500 67.8
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 2.4e-210 735.7 542 64.4
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 7.1e-210 734.2 505 66.9
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 7.1e-210 734.2 487 68.0
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 7.1e-210 734.2 519 65.7
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 9.2e-210 733.8 510 67.8
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 2.1e-209 732.6 507 68.0
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 1.0e-208 730.3 486 69.3
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.7e-208 729.6 489 69.9
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 3.0e-208 728.8 513 65.7
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.1e-207 726.9 489 69.3
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 1.1e-207 726.9 501 67.3
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 1.9e-207 726.1 511 67.5
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 3.3e-207 725.3 510 66.9
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 1.6e-206 723.0 491 67.2
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 1.1e-205 720.3 512 67.8
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 1.8e-205 719.5 510 65.5
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 7.6e-204 714.1 510 65.1
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 7.6e-204 714.1 495 68.3
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 9.9e-204 713.8 501 66.5
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 2.2e-203 712.6 464 72.2
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 1.9e-202 709.5 472 69.3
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 9.2e-202 707.2 481 66.5
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.0e-200 703.7 476 69.5
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 6.6e-200 701.0 503 65.4
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 8.7e-200 700.7 484 67.6
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 1.5e-199 699.9 475 68.2
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 2.5e-199 699.1 454 70.3
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 3.3e-199 698.7 510 64.1
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 9.6e-199 697.2 487 66.1
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 9.6e-199 697.2 477 67.1
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 1.6e-198 696.4 494 66.6
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 3.6e-198 695.3 495 66.1
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 3.6e-198 695.3 498 65.7
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 4.7e-198 694.9 527 63.8
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 1.1e-197 693.7 508 68.3
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.4e-197 692.6 510 63.7
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 5.3e-197 691.4 499 64.7
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 3.4e-196 688.7 528 63.3
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 1.7e-195 686.4 495 65.5
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 1.7e-195 686.4 489 66.1
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.9e-194 682.9 508 64.6
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 3.2e-194 682.2 495 64.6
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 3.2e-194 682.2 495 64.6
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 4.2e-194 681.8 495 64.8
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 3.5e-193 678.7 453 70.0
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 7.3e-191 671.0 513 63.2
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 2.4e-189 666.0 472 65.7
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 9.0e-189 664.1 542 60.5
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 2.2e-187 659.4 487 64.1
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 3.8e-179 632.1 490 62.2
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 1.8e-165 586.6 498 55.4
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 9.4e-154 547.7 379 67.0
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 4.5e-148 528.9 370 66.8
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 7.4e-143 511.5 352 66.5
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 2.9e-139 499.6 353 65.4
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 4.2e-130 469.2 332 63.6
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.2e-112 409.1 304 61.5
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.1e-109 401.4 313 58.5
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.0e-108 397.1 496 45.2
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 2.1e-97 360.5 242 66.5
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 8.1e-89 332.0 214 67.8
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 3.3e-74 283.5 183 71.0
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.3e-67 260.8 177 70.1
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 1.4e-56 224.9 148 66.2
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 3.1e-56 223.8 155 68.4
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 1.9e-21 108.2 104 52.9
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 7.0e-16 89.7 51 74.5
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 3.4e-10 70.9 79 43.0
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 4.4e-10 70.5 84 45.2
Oeu030220.2 Olea europaea HOM05D006934 ORTHO05D008743 3.5e-07 60.8 40 67.5


User provided reference genes

Program Settings