Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 2.2e-208 728.8 389 100.0
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 1.4e-191 672.9 397 90.2
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.7e-152 543.1 377 80.9
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.8e-149 533.1 395 80.0
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 7.5e-140 501.1 409 72.1
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 2.3e-133 479.6 395 69.6
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 5.4e-130 468.4 377 69.0
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.6e-110 403.7 384 63.8
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 5.3e-101 372.1 371 59.0
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 8.4e-99 364.8 385 61.6
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 4.3e-95 352.4 405 55.1
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.8e-93 347.1 404 53.0
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 1.5e-92 344.0 409 54.5
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 1.9e-90 337.0 415 54.0
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 2.5e-90 336.7 405 52.3
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 3.2e-90 336.3 405 54.1
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 5.5e-90 335.5 410 53.2
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 9.3e-90 334.7 408 53.4
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 1.6e-89 334.0 408 55.1
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 3.0e-88 329.7 388 56.7
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 6.7e-88 328.6 412 55.3
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 4.3e-87 325.9 411 53.3
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 2.4e-85 320.1 415 50.1
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 5.3e-85 318.9 418 52.6
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.5e-84 317.4 417 51.8
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 8.4e-83 311.6 371 53.9
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 1.9e-82 310.5 424 48.6
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 4.2e-82 309.3 424 52.1
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 5.5e-82 308.9 416 51.0
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 9.3e-82 308.1 421 51.3
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.9e-80 302.8 421 50.6
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 5.1e-80 302.4 445 51.9
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.1e-79 301.2 419 51.3
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 1.5e-79 300.8 419 50.8
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.4e-79 298.5 419 50.6
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 3.1e-77 293.1 382 50.3
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 9.0e-77 291.6 420 46.4
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 9.0e-77 291.6 430 49.5
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 2.6e-76 290.0 390 51.3
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 4.2e-74 282.7 416 48.6
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 2.1e-73 280.4 409 46.0
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 3.3e-71 273.1 408 48.0
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 7.4e-71 271.9 409 46.7
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 9.7e-71 271.6 407 48.2
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 2.8e-70 270.0 410 46.6
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.8e-69 267.3 388 45.6
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 6.9e-69 265.4 386 47.4
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.0e-67 259.2 408 45.8
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.1e-66 258.1 409 45.7
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 2.5e-66 256.9 401 49.4
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.2e-65 254.6 387 49.6
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 5.1e-64 249.2 349 50.4
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 2.0e-63 247.3 419 46.8
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 3.3e-63 246.5 398 42.0
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 1.8e-61 240.7 410 44.1
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 5.9e-60 235.7 404 45.3
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 2.9e-59 233.4 314 49.4
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 3.8e-59 233.0 404 44.1
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 3.8e-59 233.0 384 41.7
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.2e-57 228.0 291 52.2
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 1.6e-57 227.6 453 44.6
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 3.6e-57 226.5 383 42.8
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 2.3e-56 223.8 454 41.6
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.0e-55 220.7 351 45.0
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 5.7e-55 219.2 354 42.4
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.4e-53 214.5 425 40.5
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.6e-52 210.3 408 38.5
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 7.7e-52 208.8 408 44.1
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 1.7e-51 207.6 446 39.2
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 8.0e-49 198.7 401 40.6
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 4.4e-47 193.0 308 46.1
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 1.3e-46 191.4 296 46.6
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 1.7e-46 191.0 401 39.2
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 3.7e-46 189.9 454 39.6
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.0e-44 184.1 360 35.3
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 1.0e-43 181.8 375 42.1
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.7e-43 181.0 415 36.6
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.2e-42 176.4 380 39.5
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 7.2e-42 175.6 385 39.5
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.6e-41 174.5 286 38.5
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 2.3e-40 170.6 450 30.9
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 4.0e-40 169.9 393 36.6
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.2e-39 168.3 403 36.2
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 1.2e-39 168.3 420 39.8
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.7e-38 164.5 350 44.9
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 2.8e-38 163.7 393 39.7
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 3.7e-38 163.3 366 38.8
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 3.7e-38 163.3 392 39.8
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.3e-35 154.8 416 34.1
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 3.8e-35 153.3 377 38.2
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 5.0e-35 152.9 203 42.4
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 3.3e-34 150.2 313 36.7
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 3.3e-34 150.2 105 66.7
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 5.6e-34 149.4 341 37.0
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.6e-33 147.9 394 34.5
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.0e-32 145.2 181 47.5
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 8.9e-32 142.1 385 35.6
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 4.4e-31 139.8 402 36.6
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 2.9e-30 137.1 444 32.0
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 2.0e-28 131.0 300 34.7
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.9e-28 129.4 313 37.4
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 5.0e-27 126.3 392 36.5
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 2.1e-25 120.9 342 31.9
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 3.6e-25 120.2 317 35.0
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 1.0e-24 118.6 113 50.4
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.4e-24 118.2 322 37.3
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 8.9e-24 115.5 122 63.9
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.2e-23 115.2 189 41.3
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 8.3e-22 109.0 133 45.9
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.6e-20 104.8 332 32.2
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 4.6e-20 103.2 118 61.9
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 3.0e-19 100.5 338 30.8
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 4.3e-18 96.7 327 36.7
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 1.2e-17 95.1 325 34.2
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 2.8e-17 94.0 324 33.6
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 2.8e-17 94.0 324 33.6
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 3.6e-17 93.6 329 35.0
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 3.6e-17 93.6 329 35.6
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 3.6e-17 93.6 329 35.6
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 3.1e-16 90.5 344 34.0
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 3.1e-16 90.5 323 35.6
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 6.8e-16 89.4 305 30.5
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 1.2e-15 88.6 328 33.5
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 1.2e-15 88.6 328 29.0
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.2e-15 88.6 335 32.2
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 5.8e-15 86.3 335 31.9
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 1.7e-14 84.7 402 26.1
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 2.9e-14 84.0 175 39.4
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 4.9e-14 83.2 154 43.5
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 1.1e-13 82.0 153 41.8
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 1.9e-13 81.3 409 26.9
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 2.4e-13 80.9 325 31.1
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 2.4e-13 80.9 308 29.5
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 5.4e-13 79.7 328 32.3
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 5.4e-13 79.7 328 32.3
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 7.1e-13 79.3 325 32.3
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 9.2e-13 79.0 112 50.9
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.2e-12 78.6 328 32.3
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 4.6e-12 76.6 325 33.2
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 3.0e-11 73.9 394 31.2
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 3.9e-11 73.6 50 80.0
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 3.9e-11 73.6 389 27.0
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 2.5e-10 70.9 162 36.4
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 2.5e-10 70.9 312 27.9
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.8e-09 67.4 303 27.7
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 8.1e-09 65.9 336 29.8
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 5.8e-07 59.7 72 34.7
unitig_0.g2816 Utricularia gibba HOM05D005213 ORTHO05D006229 3.7e-06 57.0 300 27.3


User provided reference genes

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