Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G055600 Glycine max HOM05D007388 ORTHO05D009421 2.0e-113 412.5 216 100.0
Glyma.04G055400 Glycine max HOM05D007388 ORTHO05D009421 9.4e-108 393.7 216 95.4
Phvul.009G081500 Phaseolus vulgaris HOM05D007388 ORTHO05D009421 5.7e-89 331.3 216 79.6
VMungo1309G3057 Vigna mungo HOM05D007388 ORTHO05D009421 6.5e-85 317.8 215 76.7
Lalb_Chr11g0063321 Lupinus albus HOM05D007388 ORTHO05D009421 7.0e-71 271.2 217 68.7
TPR.G3529 Trifolium pratense HOM05D007388 ORTHO05D009421 2.3e-66 256.1 219 64.4
Medtr3g104980 Medicago truncatula HOM05D007388 ORTHO05D009421 2.6e-65 252.7 219 62.6
Psat5g102720 Pisum sativum HOM05D007388 ORTHO05D009421 2.6e-65 252.7 216 62.0
Lj1g0010451 Lotus japonicus HOM05D007388 ORTHO05D009421 8.3e-64 247.7 219 65.3
QL02p016663 Quercus lobata HOM05D007388 ORTHO05D009421 1.7e-61 240.0 219 60.7
CiPaw.16G070200 Carya illinoinensis HOM05D007388 ORTHO05D009421 7.3e-60 234.6 225 60.9
Atru.chr7.1857 Acer truncatum HOM05D007388 ORTHO05D009421 1.2e-59 233.8 223 58.7
TWI63G1062 Tripterygium wilfordii HOM05D007388 ORTHO05D009421 1.2e-59 233.8 217 58.5
MD15G1051600 Malus domestica HOM05D007388 ORTHO05D009421 4.7e-59 231.9 222 60.4
TAR383G1008 Trochodendron aralioides HOM05D007388 ORTHO05D009421 4.7e-59 231.9 220 59.1
RcHm_v2.0_Chr6g0311651 Rosa chinensis HOM05D007388 ORTHO05D009421 4.0e-58 228.8 220 57.3
Eucgr.C03150 Eucalyptus grandis HOM05D007388 ORTHO05D009421 1.2e-57 227.3 219 57.1
MELO3C016910.2 Cucumis melo HOM05D007388 ORTHO05D009421 1.5e-57 226.9 221 59.7
Gohir.A05G039100 Gossypium hirsutum HOM05D007388 ORTHO05D009421 2.0e-57 226.5 219 60.3
Nn8g38703 Nelumbo nucifera HOM05D007388 ORTHO05D009421 2.6e-57 226.1 221 57.5
Duzib168G1804 Durio zibethinus HOM05D007388 ORTHO05D009421 9.8e-57 224.2 219 60.7
COL.COLO4_21128 Corchorus olitorius HOM05D007388 ORTHO05D009421 1.7e-56 223.4 218 58.3
Gohir.D05G040600 Gossypium hirsutum HOM05D007388 ORTHO05D009421 1.7e-56 223.4 219 59.8
Ciclev10009451m.g Citrus clementina HOM05D007388 ORTHO05D009421 2.2e-56 223.0 218 56.4
Manes.16G084900 Manihot esculenta HOM05D007388 ORTHO05D009421 2.2e-56 223.0 217 57.6
PGR044G0912 Punica granatum HOM05D007388 ORTHO05D009421 2.2e-56 223.0 188 63.3
CsaV3_4G036020 Cucumis sativus L. HOM05D007388 ORTHO05D009421 4.9e-56 221.9 221 59.3
Cfa018015 Carpinus fangiana HOM05D007388 ORTHO05D009421 1.2e-54 217.2 220 56.8
FvH4_2g31130 Fragaria vesca HOM05D007388 ORTHO05D009421 2.1e-54 216.5 221 56.1
Sed0027665 Sechium edule HOM05D007388 ORTHO05D009421 3.5e-54 215.7 193 60.6
FAN20G0472 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.3e-53 213.8 223 56.5
BcaB08g36472 Brassica carinata HOM05D007388 ORTHO05D009421 3.9e-53 212.2 206 54.9
ClCG05G015710 Citrullus lanatus HOM05D007388 ORTHO05D009421 6.6e-53 211.5 232 54.3
FAN24G3326 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.1e-52 210.7 221 54.8
ECA240G1505 Erigeron canadensis HOM05D007388 ORTHO05D009421 9.5e-52 207.6 228 53.1
GSVIVG01035454001 Vitis vinifera HOM05D007388 ORTHO05D009421 9.5e-52 207.6 216 53.7
A10p18840 Brassica napus HOM05D007388 ORTHO05D009421 3.6e-51 205.7 209 53.1
MSTRG.25983 Avicennia marina HOM05D007388 ORTHO05D009421 4.7e-51 205.3 181 61.3
Potri.006G221900 Populus trichocarpa HOM05D007388 ORTHO05D009421 8.1e-51 204.5 218 54.1
FAN27G0155 Fragaria x ananassa HOM05D007388 ORTHO05D009421 2.3e-50 203.0 241 51.5
BraA10t43964Z Brassica rapa HOM05D007388 ORTHO05D009421 3.1e-50 202.6 209 52.6
AL6G32850 Arabidopsis lyrata HOM05D007388 ORTHO05D009421 4.0e-50 202.2 194 55.2
AUR62020582 Chenopodium quinoa HOM05D007388 ORTHO05D009421 4.0e-50 202.2 242 49.6
BcaC04g19512 Brassica carinata HOM05D007388 ORTHO05D009421 5.2e-50 201.8 209 52.6
C09p54850 Brassica napus HOM05D007388 ORTHO05D009421 5.2e-50 201.8 209 52.6
BolC9t58346H Brassica oleracea HOM05D007388 ORTHO05D009421 5.2e-50 201.8 209 52.6
HanXRQChr04g0097861 Helianthus annuus HOM05D007388 ORTHO05D009421 6.8e-50 201.4 196 56.1
Thecc.09G062100 Theobroma cacao HOM05D007388 ORTHO05D009421 6.8e-50 201.4 218 55.0
arahy.Tifrunner.gnm1.ann1.P6UV73 Arachis hypogaea HOM05D007388 ORTHO05D009421 1.2e-49 200.7 228 57.5
Sabra06G0171500 Salix brachista HOM05D007388 ORTHO05D009421 3.4e-49 199.1 218 51.8
AUR62009088 Chenopodium quinoa HOM05D007388 ORTHO05D009421 4.4e-49 198.7 217 50.2
THA.LOC104799581 Tarenaya hassleriana HOM05D007388 ORTHO05D009421 4.4e-49 198.7 196 55.6
CSS0004113 Camellia sinensis var. sinensis HOM05D007388 ORTHO05D009421 7.6e-49 198.0 186 54.3
Thhalv10014636m.g Eutrema salsugineum HOM05D007388 ORTHO05D009421 7.6e-49 198.0 192 54.2
AT5G21430 Arabidopsis thaliana HOM05D007388 ORTHO05D009421 9.9e-49 197.6 194 54.1
PSO421G0687 Papaver somniferum HOM05D007388 ORTHO05D009421 1.7e-48 196.8 227 48.5
Dinv41838 Davidia involucrata HOM05D007388 ORTHO05D009421 2.2e-48 196.4 190 55.3
Migut.A00083 Erythranthe guttata HOM05D007388 ORTHO05D009421 1.4e-47 193.7 188 53.7
Ca_15836_v3 Cicer arietinum L. HOM05D007388 ORTHO05D009421 1.9e-47 193.4 144 69.4
ATR0598G070 Amborella trichopoda HOM05D007388 ORTHO05D009421 2.4e-47 193.0 148 63.5
arahy.Tifrunner.gnm1.ann1.044LWD Arachis hypogaea HOM05D000560 ORTHO05D000417 9.2e-47 191.0 229 55.9
CANSAT25G2576 Cannabis sativa HOM05D007388 ORTHO05D009421 9.2e-47 191.0 232 49.6
Carub.0006s1952 Capsella rubella HOM05D007388 ORTHO05D009421 1.6e-46 190.3 196 53.1
CDE06G1148 Ceratophyllum demersum HOM05D007388 ORTHO05D009421 1.6e-46 190.3 202 52.5
Prupe.1G405600 Prunus persica HOM05D007388 ORTHO05D009421 3.5e-46 189.1 218 53.2
Sp6g23310 Schrenkiella parvula HOM05D007388 ORTHO05D009421 6.0e-46 188.3 213 47.9
Aa31LG1G13520 Aethionema arabicum HOM05D007388 ORTHO05D009421 1.3e-45 187.2 183 56.3
Peaxi162Scf00596g00105 Petunia axillaris HOM05D007388 ORTHO05D009421 3.0e-45 186.0 219 48.9
Actinidia25694 Actinidia chinensis HOM05D007388 ORTHO05D009421 3.9e-45 185.7 170 54.7
Nitab4.5_0001705g0020 Nicotiana tabacum HOM05D007388 ORTHO05D009421 3.9e-45 185.7 186 53.8
CARHR191660 Cardamine hirsuta HOM05D007388 ORTHO05D009421 1.9e-44 183.3 215 50.2
Gorai.009G041100 Gossypium raimondii HOM05D007388 ORTHO05D009421 1.9e-44 183.3 189 58.7
MBI19_g11844_MAGBIO Magnolia biondii HOM05D007388 ORTHO05D009421 5.6e-44 181.8 222 48.6
Atru.BG.20.p Acer truncatum HOM05D007388 ORTHO05D009421 1.4e-42 177.2 129 65.9
CAN.G246.5 Capsicum annuum HOM05D007388 ORTHO05D009421 1.5e-41 173.7 221 47.5
DCAR_003716 Daucus carota HOM05D007388 ORTHO05D009421 1.5e-41 173.7 158 54.4
Aqoxy7G01075 Aquilegia oxysepala HOM05D007388 ORTHO05D009421 2.0e-41 173.3 215 51.6
PGSC0003DMG400027673 Solanum tuberosum HOM05D007388 ORTHO05D009421 4.4e-41 172.2 218 48.2
Sopen06g034360 Solanum pennellii HOM05D007388 ORTHO05D009421 5.8e-41 171.8 184 54.3
EL10Ac2g03792 Beta vulgaris HOM05D007388 ORTHO05D009421 7.6e-41 171.4 159 56.6
Solyc06g082970.3 Solanum lycopersicum HOM05D007388 ORTHO05D009421 7.6e-41 171.4 184 53.8
Rhsim10G0152000 Rhododendron simsii HOM05D007388 ORTHO05D009421 2.2e-40 169.9 149 57.7
Lsat_1_v5_gn_7_58400 Lactuca sativa HOM05D007388 ORTHO05D009421 1.4e-39 167.2 192 52.6
Oeu000765.1 Olea europaea HOM05D007388 ORTHO05D009421 1.4e-39 167.2 259 40.2
Zm00001eb409580 Zea mays HOM05D007388 ORTHO05D009421 6.0e-38 161.8 145 58.6
CDE07G0202 Ceratophyllum demersum HOM05D007388 ORTHO05D001048 3.0e-37 159.5 181 50.3
Lj7C227T7 Lonicera japonica HOM05D007388 ORTHO05D009421 3.0e-37 159.5 230 42.6
Os12g0498500 Oryza sativa ssp. japonica HOM05D007388 ORTHO05D009421 1.1e-36 157.5 145 55.9
Cc08_g01260 Coffea canephora HOM05D007388 ORTHO05D009421 5.6e-36 155.2 154 56.5
Lj7C225T7 Lonicera japonica HOM05D007388 ORTHO05D009421 6.4e-32 141.7 230 40.0
Nitab4.5_0000268g0090 Nicotiana tabacum HOM05D007388 ORTHO05D009421 8.4e-32 141.4 226 41.2
vmacro12914 Vaccinium macrocarpon HOM05D007388 ORTHO05D009421 5.4e-31 138.7 233 40.3
AagrBONN_evm.TU.Sc2ySwM_368.3296 Anthoceros agrestis HOM05D007388 ORTHO05D009421 4.5e-25 119.0 173 40.5
Pp3c4_14700 Physcomitrium patens HOM05D007388 ORTHO05D009421 1.8e-21 107.1 183 40.4
Pp3c12_9640 Physcomitrium patens HOM05D007388 ORTHO05D009421 2.8e-19 99.8 180 38.3
unitig_4.g30329 Utricularia gibba HOM05D007388 ORTHO05D009421 2.8e-19 99.8 151 44.4
Hma1.2p1_0231F.1_g097390 Hydrangea macrophylla HOM05D007388 ORTHO05D009421 4.5e-17 92.4 100 53.0
Mapoly0129s0003 Marchantia polymorpha HOM05D007388 ORTHO05D009421 1.2e-14 84.3 179 31.3
BNapus_Darmor_BZH_scaffold_38p01020 Brassica napus HOM05D007388 ORTHO05D009421 4.3e-12 75.9 68 52.9
SMO223G0044 Selaginella moellendorffii HOM05D007480 ORTHO05D009460 1.1e-07 61.2 111 36.9
QL07p047550 Quercus lobata HOM05D007388 ORTHO05D009421 5.5e-07 58.9 86 48.8
QL11p041786 Quercus lobata HOM05D007388 ORTHO05D009421 1.6e-06 57.4 86 47.7
QL11p041555 Quercus lobata HOM05D007388 ORTHO05D009421 2.1e-06 57.0 86 47.7


User provided reference genes

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