Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 4.8e-183 644.4 339 100.0
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 2.6e-168 595.5 345 90.1
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 3.1e-166 588.6 336 91.4
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 2.2e-164 582.4 344 89.2
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 8.8e-161 570.5 345 87.0
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 7.4e-160 567.4 344 87.8
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 7.4e-160 567.4 343 88.3
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 2.2e-159 565.8 345 87.8
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.2e-159 565.8 336 89.3
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 5.3e-158 561.2 308 96.4
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 3.8e-156 555.1 350 85.1
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 3.8e-156 555.1 344 84.9
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 2.6e-152 542.3 357 81.2
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.0e-148 530.4 345 79.4
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 2.9e-148 528.9 340 80.0
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 3.8e-148 528.5 340 79.7
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.5e-147 526.6 345 79.1
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 4.2e-147 525.0 345 79.1
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 5.5e-147 524.6 345 78.3
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 2.7e-146 522.3 309 88.0
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 3.6e-146 521.9 347 77.5
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.8e-145 519.6 341 78.9
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 2.3e-145 519.2 346 78.6
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 3.0e-145 518.8 344 77.6
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.2e-144 516.9 345 75.9
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.5e-144 516.5 345 77.1
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.5e-144 516.5 341 78.9
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.4e-144 515.0 345 76.5
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.7e-144 514.6 345 76.5
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 5.7e-144 514.6 345 76.5
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 2.8e-143 512.3 344 76.7
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 3.7e-143 511.9 345 75.4
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 3.7e-143 511.9 346 76.9
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.1e-142 510.4 345 77.1
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 7.0e-142 507.7 344 75.9
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 7.0e-142 507.7 345 76.5
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 7.0e-142 507.7 345 76.5
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 9.1e-142 507.3 346 76.6
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.2e-141 506.9 345 75.4
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 3.5e-141 505.4 345 75.9
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 3.5e-141 505.4 341 74.2
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.5e-141 505.0 345 75.7
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 5.9e-141 504.6 345 74.5
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 7.7e-141 504.2 331 77.3
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.0e-140 503.8 345 75.4
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.3e-140 503.4 345 74.8
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.7e-140 503.1 345 74.2
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 2.3e-140 502.7 344 75.0
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 2.3e-140 502.7 349 74.8
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.9e-140 502.3 340 76.8
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 8.6e-140 500.7 339 79.6
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 8.6e-140 500.7 345 73.9
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.2e-138 496.9 343 73.8
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.6e-138 496.5 345 74.8
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 3.6e-138 495.4 345 74.2
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.6e-138 495.4 343 73.2
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 6.1e-138 494.6 345 74.2
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 6.1e-138 494.6 343 73.2
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 6.1e-138 494.6 345 74.5
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 1.8e-137 493.0 341 75.4
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 2.3e-137 492.7 344 78.5
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 4.0e-137 491.9 343 72.3
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.2e-137 491.5 339 77.9
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 6.8e-137 491.1 343 72.0
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 6.8e-137 491.1 344 73.3
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 6.8e-137 491.1 348 74.1
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 8.9e-137 490.7 343 71.7
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 8.9e-137 490.7 343 72.6
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 8.9e-137 490.7 272 92.3
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 8.9e-137 490.7 348 73.6
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 3.4e-136 488.8 348 73.3
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.3e-135 486.9 343 72.0
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 1.7e-135 486.5 345 73.0
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.7e-135 486.5 345 71.9
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 3.7e-135 485.3 343 72.0
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.4e-134 483.4 343 71.1
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.4e-134 483.4 343 71.1
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 1.8e-134 483.0 343 71.7
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 3.1e-134 482.3 355 69.6
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 4.1e-134 481.9 337 74.8
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 4.1e-134 481.9 343 70.8
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 4.1e-134 481.9 343 70.8
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 4.1e-134 481.9 343 70.8
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 5.4e-134 481.5 343 71.1
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 7.0e-134 481.1 367 70.0
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.2e-133 480.3 340 74.4
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 2.0e-133 479.6 388 66.8
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 3.5e-133 478.8 345 71.9
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 5.9e-133 478.0 338 73.7
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 2.9e-132 475.7 347 70.9
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 6.6e-132 474.6 355 69.3
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.1e-131 473.8 325 74.8
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 3.3e-131 472.2 345 71.6
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.2e-130 470.3 343 71.7
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.6e-130 469.9 345 75.7
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.0e-129 465.7 303 78.5
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.0e-129 465.3 308 77.6
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 6.8e-129 464.5 272 84.6
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 9.2e-126 454.1 415 61.2
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 2.4e-118 429.5 335 68.7
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.5e-115 420.2 295 75.6
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 2.5e-115 419.5 338 64.2
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 2.3e-113 412.9 343 64.1
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 4.1e-110 402.1 395 59.5
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 3.5e-109 399.1 329 65.7
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 3.9e-108 395.6 418 55.7
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.3e-103 380.6 345 64.9
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 3.2e-102 375.9 222 82.0
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 7.1e-102 374.8 286 69.9
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 1.9e-99 366.7 222 79.7
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.8e-97 360.1 343 58.6
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 8.7e-92 341.3 246 71.5
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 9.6e-91 337.8 380 50.8
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.4e-89 333.2 204 79.9
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 6.9e-81 305.1 395 50.9
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 1.9e-78 297.0 324 50.6
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 2.5e-75 286.6 344 51.2
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.3e-74 284.3 169 81.1
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 1.7e-71 273.9 249 60.6
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 6.0e-69 265.4 249 57.4
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 6.3e-66 255.4 200 65.0
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 9.0e-65 251.5 261 51.3
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 3.4e-64 249.6 252 55.2
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 4.2e-54 216.1 232 54.3
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 6.7e-52 208.8 144 75.0
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 2.6e-51 206.8 144 69.4
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.3e-50 204.5 194 55.2
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.7e-50 204.1 184 64.7
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 2.6e-48 196.8 164 66.5
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 5.9e-48 195.7 340 36.8
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.5e-43 181.0 110 84.5
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.4e-43 179.5 131 69.5
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 4.5e-40 169.5 334 34.1
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 1.7e-39 167.5 323 35.0
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 7.2e-38 162.2 317 35.6
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 2.2e-31 140.6 113 66.4
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 2.5e-30 137.1 132 63.6
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 1.3e-26 124.8 74 82.4
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 2.8e-26 123.6 106 68.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 8.0e-21 105.5 95 65.3
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 1.8e-20 104.4 73 69.9
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.8e-17 94.4 95 57.9
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 9.5e-06 55.5 38 73.7


User provided reference genes

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