Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 3.9e-84 314.7 153 100.0
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 9.8e-43 177.2 150 65.3
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 3.5e-32 142.1 163 50.3
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 8.6e-31 137.5 160 52.5
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 8.0e-29 131.0 155 50.3
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 3.1e-28 129.0 143 51.7
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.1e-28 129.0 155 49.0
Phvul.009G074000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 8.3e-26 120.9 140 47.1
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 3.5e-24 115.5 157 49.7
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.0e-23 114.0 153 43.1
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 1.3e-23 113.6 153 44.4
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.0e-23 112.5 156 44.2
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 5.0e-23 111.7 159 44.7
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 8.6e-23 110.9 156 44.9
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.3e-22 109.0 146 48.6
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.3e-22 109.0 144 47.9
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 2.1e-21 106.3 150 42.7
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 3.6e-21 105.5 160 43.1
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 4.7e-21 105.1 157 44.6
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 5.2e-20 101.7 149 40.3
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 8.9e-20 100.9 153 42.5
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 1.2e-19 100.5 151 41.7
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.5e-19 100.1 146 43.2
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.5e-19 97.8 150 40.7
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 9.8e-19 97.4 139 46.0
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-17 93.2 150 41.3
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.4e-17 92.8 148 39.9
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 3.2e-17 92.4 149 42.3
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 3.2e-17 92.4 160 40.6
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.1e-17 91.3 150 41.3
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 7.1e-17 91.3 152 41.4
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.1e-16 89.7 150 41.3
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.0e-16 88.2 149 38.9
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 7.8e-16 87.8 178 36.0
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.8e-16 87.8 150 36.0
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.8e-16 87.8 143 38.5
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.0e-15 87.4 94 46.8
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 1.7e-15 86.7 152 38.2
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.7e-15 86.7 173 34.1
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 1.7e-15 86.7 146 39.7
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.3e-15 86.3 150 38.0
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.0e-15 85.9 150 33.3
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 3.0e-15 85.9 153 37.9
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.9e-15 85.5 163 38.0
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 5.1e-15 85.1 156 35.3
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 8.6e-15 84.3 173 34.1
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.1e-14 84.0 153 40.5
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 1.5e-14 83.6 151 37.7
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.5e-14 83.6 152 36.2
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 2.5e-14 82.8 175 36.0
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 3.3e-14 82.4 178 33.7
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.3e-14 82.4 173 32.9
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 3.3e-14 82.4 174 32.2
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 5.6e-14 81.6 153 39.2
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 5.6e-14 81.6 158 37.3
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.3e-14 81.3 178 33.1
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.3e-14 81.3 150 38.0
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.6e-13 80.1 166 33.7
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 2.8e-13 79.3 155 38.7
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 4.7e-13 78.6 157 33.8
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 6.2e-13 78.2 153 37.3
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 8.1e-13 77.8 149 36.9
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.1e-12 77.4 165 37.0
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.1e-12 77.4 144 37.5
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.4e-12 77.0 160 35.0
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 2.3e-12 76.3 159 34.0
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.3e-12 76.3 161 37.3
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 6.8e-12 74.7 156 35.3
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 6.8e-12 74.7 159 34.6
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 8.9e-12 74.3 93 45.2
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-11 73.9 158 38.0
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.2e-11 73.9 159 34.6
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 1.2e-11 73.9 152 35.5
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.2e-11 73.9 159 34.0
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 1.5e-11 73.6 159 34.6
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.0e-11 73.2 162 34.6
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 2.0e-11 73.2 146 32.9
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 2.6e-11 72.8 160 36.9
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-11 72.8 155 38.1
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-11 72.8 155 38.1
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.8e-11 71.6 143 38.5
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 7.6e-11 71.2 149 34.9
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 7.6e-11 71.2 144 36.1
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 7.6e-11 71.2 153 37.3
arahy.Tifrunner.gnm1.ann1.K9IMQL Arachis hypogaea HOM05D005317 ORTHO05D005146 9.9e-11 70.9 180 32.2
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 9.9e-11 70.9 164 33.5
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-10 70.5 155 36.8
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.7e-10 70.1 159 35.8
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 2.2e-10 69.7 105 41.0
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.2e-10 69.7 141 39.0
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.9e-10 69.3 143 37.8
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 3.8e-10 68.9 151 35.1
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 4.9e-10 68.6 124 36.3
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.9e-10 68.6 137 34.3
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 4.9e-10 68.6 148 34.5
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 6.4e-10 68.2 155 34.8
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 8.4e-10 67.8 112 42.0
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.1e-09 67.4 168 34.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.4e-09 67.0 143 37.8
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.9e-09 66.6 142 37.3
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 1.9e-09 66.6 164 32.3
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 2.4e-09 66.2 114 41.2
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.1e-09 65.5 158 34.8
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 5.4e-09 65.1 147 34.7
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.4e-09 65.1 149 34.9
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 7.1e-09 64.7 164 32.3
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 9.2e-09 64.3 143 32.2
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-08 63.9 137 33.6
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.6e-08 63.5 142 30.3
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 1.6e-08 63.5 156 32.1
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 2.1e-08 63.2 139 33.8
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 2.7e-08 62.8 171 31.6
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.7e-08 62.8 149 34.2
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 2.7e-08 62.8 105 37.1
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 4.6e-08 62.0 161 31.1
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 4.6e-08 62.0 160 31.2
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 6.0e-08 61.6 142 31.0
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 6.0e-08 61.6 102 41.2
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 6.0e-08 61.6 149 32.2
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.0e-07 60.8 154 33.8
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.0e-07 60.8 166 30.7
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.7e-07 60.1 166 30.1
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 2.3e-07 59.7 159 35.8
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 2.3e-07 59.7 130 36.2
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.0e-07 59.3 132 35.6
Phvul.001G030900 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 6.6e-07 58.2 124 37.1
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 6.6e-07 58.2 140 32.9
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 8.6e-07 57.8 131 37.4
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-06 57.4 144 31.2
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 1.5e-06 57.0 143 28.7
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-06 57.0 149 32.9
Glyma.06G048800 Glycine max HOM05D014755 ORTHO05D005146 1.9e-06 56.6 97 40.2
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 3.3e-06 55.8 101 36.6
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 3.3e-06 55.8 151 32.5


User provided reference genes

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