Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 3.8e-148 528.1 256 100.0
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 4.6e-130 468.0 256 91.0
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.6e-114 415.2 256 81.2
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 4.5e-109 398.3 257 77.0
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 9.4e-107 390.6 258 76.4
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 8.8e-105 384.0 258 74.0
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.0e-104 382.9 257 74.3
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 4.1e-102 375.2 257 73.2
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 5.3e-102 374.8 257 74.3
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-101 373.2 251 74.1
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.0e-100 368.2 250 73.2
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.1e-99 367.1 258 72.5
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.6e-92 340.9 257 65.8
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 8.6e-92 340.9 262 65.3
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.1e-91 340.5 255 66.3
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 5.5e-91 338.2 259 68.3
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.1e-90 336.3 260 65.4
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 8.0e-90 334.3 260 66.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.0e-89 334.0 260 66.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 6.8e-89 331.3 216 76.4
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.6e-88 329.3 262 65.3
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.6e-88 329.3 260 65.4
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 5.7e-88 328.2 264 64.4
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 7.5e-88 327.8 255 67.1
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 9.8e-88 327.4 265 64.2
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 4.9e-87 325.1 263 62.7
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 8.3e-87 324.3 255 65.5
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.8e-86 323.2 258 64.7
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.4e-86 321.6 254 66.5
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.4e-86 321.6 257 63.8
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 9.2e-86 320.9 250 65.2
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.6e-85 320.1 265 61.9
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 7.8e-85 317.8 258 62.8
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.0e-84 317.4 264 62.9
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.0e-84 317.4 259 66.4
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.7e-84 316.6 250 63.6
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.7e-84 316.6 182 79.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.3e-84 316.2 256 62.9
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.9e-84 315.8 260 63.5
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.8e-84 315.5 262 61.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 5.0e-84 315.1 259 64.9
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.0e-84 315.1 259 64.9
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.5e-83 313.5 254 62.2
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.5e-83 313.5 262 61.1
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.5e-83 312.8 179 79.3
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.3e-83 312.4 259 64.5
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.6e-82 310.1 262 62.2
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.1e-82 309.7 262 61.8
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.1e-82 309.7 260 61.9
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.8e-82 309.3 259 63.3
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.4e-81 307.0 263 61.2
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.8e-81 306.6 258 62.8
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.3e-81 306.2 265 58.5
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 2.3e-81 306.2 263 59.7
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.2e-81 305.1 263 60.5
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 6.8e-81 304.7 253 64.0
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 6.8e-81 304.7 258 60.9
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.8e-81 304.7 254 62.6
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.4e-80 302.0 248 62.9
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 7.5e-80 301.2 182 73.6
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 9.8e-80 300.8 211 70.6
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 7.0e-78 294.7 260 60.0
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.6e-77 293.5 257 57.6
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.0e-77 293.1 266 57.9
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.0e-77 293.1 253 60.5
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.0e-77 293.1 263 57.4
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.5e-77 292.4 261 60.2
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 3.5e-77 292.4 296 55.4
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 4.6e-77 292.0 263 59.3
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 6.0e-77 291.6 266 60.5
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 6.0e-77 291.6 257 60.3
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 7.8e-77 291.2 258 57.8
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.0e-76 290.8 271 55.7
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 1.0e-76 290.8 265 60.0
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.3e-76 290.4 181 72.4
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.7e-76 290.0 266 57.1
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 3.0e-76 289.3 259 57.5
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.9e-76 288.9 201 69.7
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 3.9e-76 288.9 267 55.8
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 5.0e-76 288.5 172 78.5
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 5.0e-76 288.5 172 78.5
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 6.6e-76 288.1 214 65.0
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 8.6e-76 287.7 271 55.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 8.6e-76 287.7 259 57.9
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.1e-75 287.3 265 57.7
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.5e-75 287.0 267 57.7
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.5e-75 287.0 176 75.0
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.9e-75 286.6 259 57.5
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 4.3e-75 285.4 261 57.1
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 7.3e-75 284.6 264 55.7
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 7.3e-75 284.6 175 73.7
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-74 283.9 267 54.7
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.2e-74 283.9 258 56.6
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.6e-74 283.5 182 69.8
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.1e-74 283.1 183 71.0
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 2.8e-74 282.7 261 56.7
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 3.6e-74 282.3 253 59.3
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.6e-74 282.3 261 55.9
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 3.6e-74 282.3 249 58.6
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 6.2e-74 281.6 260 55.4
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 6.2e-74 281.6 265 55.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 6.2e-74 281.6 175 76.0
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 8.0e-74 281.2 192 69.3
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 8.0e-74 281.2 267 55.8
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.8e-73 280.0 259 57.9
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.8e-73 280.0 253 58.1
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-73 279.6 174 73.6
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-73 279.6 174 73.6
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 8.9e-73 277.7 264 54.9
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.6e-72 276.2 260 56.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 3.4e-72 275.8 252 56.3
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 9.8e-72 274.2 220 64.1
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 9.8e-72 274.2 260 53.8
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 9.8e-72 274.2 248 57.7
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.1e-70 270.8 192 67.7
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.1e-70 270.8 150 82.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.4e-70 270.4 255 54.9
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.4e-70 269.6 220 62.7
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.2e-69 267.3 231 58.0
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.3e-68 263.1 251 55.4
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 3.0e-68 262.7 222 61.3
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.1e-68 261.9 262 54.2
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 6.6e-68 261.5 248 54.4
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 9.5e-67 257.7 148 81.1
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.6e-66 256.9 253 54.9
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 4.7e-66 255.4 262 53.8
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.1e-65 254.2 241 57.7
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 8.3e-63 244.6 182 63.2
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 7.3e-59 231.5 137 77.4
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 2.8e-58 229.6 221 56.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.0e-57 225.7 264 48.1
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.8e-56 221.9 152 70.4
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 5.8e-56 221.9 167 60.5
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 7.6e-56 221.5 264 49.6
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.8e-55 219.2 256 50.4
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.4e-54 217.2 111 87.4
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.2e-54 216.1 144 66.7
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 7.8e-53 211.5 176 55.1
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.5e-51 207.2 169 56.8
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 3.3e-51 206.1 164 57.9
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 9.6e-51 204.5 174 54.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 6.2e-50 201.8 166 56.0
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.2e-48 197.6 257 47.9
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 7.3e-43 178.3 262 44.3
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 4.0e-41 172.6 143 64.3
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-40 170.6 215 48.8
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 5.6e-35 152.1 84 83.3
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.8e-31 139.4 90 71.1
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 7.9e-29 131.7 93 66.7
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-27 127.9 82 63.4
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-27 127.5 78 74.4
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.5e-27 126.7 109 58.7
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 8.2e-26 121.7 63 85.7
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 5.3e-25 119.0 213 31.0
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.3e-22 108.2 67 74.6
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.6e-21 107.5 78 65.4
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.7e-21 106.7 142 41.5
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.7e-20 101.7 86 59.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 5.7e-19 99.0 65 66.2
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.4e-14 84.3 48 75.0
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.4e-14 81.6 46 76.1
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.9e-12 76.3 39 79.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-11 73.9 46 69.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.0e-11 73.9 46 69.6
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.4e-08 63.2 43 65.1
arahy.Tifrunner.gnm1.ann1.T252JQ Arachis hypogaea HOM05D004168 ORTHO05D004999 8.5e-07 58.5 45 62.2
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 2.5e-06 57.0 36 63.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 7.2e-06 55.5 108 38.9


User provided reference genes

Program Settings