Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 6.1e-158 560.8 298 100.0
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 2.3e-136 489.2 296 85.1
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 4.6e-121 438.3 292 79.1
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.0e-120 437.2 300 75.7
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 2.5e-119 432.6 282 78.7
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 2.5e-119 432.6 300 75.7
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 2.1e-118 429.5 301 73.4
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 8.1e-118 427.6 297 74.1
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.3e-112 410.2 293 73.0
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 5.1e-112 408.3 269 85.5
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 9.3e-106 387.5 230 84.3
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 1.3e-104 383.6 302 68.2
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.7e-104 383.3 248 76.6
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.7e-104 383.3 248 76.6
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 3.0e-104 382.5 299 70.2
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 9.6e-103 377.5 289 67.5
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.3e-102 377.1 294 67.7
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 2.8e-102 375.9 244 76.2
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 3.6e-102 375.6 300 66.7
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.1e-101 374.0 300 67.0
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 3.1e-101 372.5 299 67.6
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 9.0e-101 370.9 300 68.0
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 2.0e-100 369.8 297 66.0
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 5.8e-100 368.2 244 77.5
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 5.8e-100 368.2 280 69.3
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 9.9e-100 367.5 249 75.9
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.3e-99 367.1 294 66.7
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 2.2e-99 366.3 296 66.6
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 3.8e-99 365.5 305 63.9
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 4.9e-99 365.2 296 64.9
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 6.4e-99 364.8 304 65.8
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 6.4e-99 364.8 303 64.4
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 6.4e-99 364.8 308 65.3
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 3.2e-98 362.5 295 66.4
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.2e-98 362.5 297 65.0
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 7.1e-98 361.3 249 71.9
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 3.5e-97 359.0 296 63.5
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 6.0e-97 358.2 302 66.9
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 6.0e-97 358.2 284 68.0
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.0e-96 357.5 244 73.8
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.3e-96 357.1 300 63.7
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.3e-96 357.1 294 66.0
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 3.9e-96 355.5 293 64.8
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 3.3e-95 352.4 288 66.7
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 4.3e-95 352.1 300 65.0
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 4.3e-95 352.1 243 70.0
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 4.3e-95 352.1 243 70.0
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 2.8e-94 349.4 244 69.3
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.4e-93 347.1 245 69.8
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 1.8e-93 346.7 248 70.6
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 5.3e-93 345.1 247 70.0
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.0e-92 343.2 225 74.7
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.6e-92 342.8 243 71.6
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 3.4e-92 342.4 248 68.1
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 7.6e-92 341.3 296 64.5
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 1.0e-91 340.9 242 72.3
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.3e-91 340.5 297 62.6
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 2.9e-91 339.3 249 67.1
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 6.5e-91 338.2 248 67.3
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 8.4e-91 337.8 236 69.5
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.4e-90 337.0 248 66.9
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 7.1e-90 334.7 297 58.6
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 7.1e-90 334.7 236 69.1
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 1.6e-89 333.6 279 62.0
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 2.1e-89 333.2 244 66.8
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 2.1e-89 333.2 248 65.3
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 2.7e-89 332.8 283 60.8
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 4.6e-89 332.0 248 65.7
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 6.0e-89 331.6 248 66.5
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 7.9e-89 331.3 285 60.7
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 1.0e-88 330.9 283 60.8
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.3e-88 330.5 238 67.6
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 1.1e-87 327.4 244 66.4
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.5e-87 327.0 225 74.2
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 7.4e-87 324.7 271 64.2
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 9.6e-87 324.3 293 58.0
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 1.6e-86 323.6 225 70.7
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 2.1e-86 323.2 248 64.5
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.1e-85 320.9 243 66.3
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 1.1e-85 320.9 244 64.8
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 2.4e-85 319.7 244 62.7
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 3.1e-85 319.3 301 56.5
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 9.0e-85 317.8 251 63.7
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 9.0e-85 317.8 255 64.3
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.5e-84 317.0 248 64.9
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 3.4e-84 315.8 247 66.8
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 3.4e-84 315.8 293 57.3
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.5e-84 315.5 377 51.7
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 7.6e-84 314.7 286 57.0
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.3e-83 313.9 296 56.8
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.4e-82 310.5 244 63.9
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.9e-82 310.1 250 62.8
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 6.1e-81 305.1 249 63.5
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.0e-80 304.3 223 66.4
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.3e-78 297.4 329 52.0
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.4e-77 293.1 363 47.4
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.0e-71 273.5 204 67.2
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 2.0e-71 273.5 241 54.8
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 2.2e-70 270.0 187 72.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.1e-69 266.2 276 55.1
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 4.5e-68 262.3 237 54.9
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 5.9e-68 261.9 190 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.7e-67 260.4 243 52.7
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 2.9e-67 259.6 241 53.5
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 5.7e-63 245.4 249 55.4
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 2.2e-62 243.4 248 52.4
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 7.0e-61 238.4 141 85.8
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 7.7e-60 235.0 161 72.0
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 2.9e-59 233.0 191 59.7
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 2.9e-59 233.0 244 48.8
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 8.5e-59 231.5 262 50.4
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 4.0e-56 222.6 269 44.6
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 2.6e-55 219.9 248 49.2
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.2e-52 211.1 202 58.4
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.0e-48 196.1 199 55.8
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 4.0e-48 196.1 244 45.5
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 4.8e-46 189.1 247 42.5
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 9.1e-45 184.9 135 66.7
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 1.0e-35 154.8 122 60.7
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 1.5e-34 151.0 196 43.9
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.0e-27 128.3 162 45.1
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 2.5e-18 97.1 79 60.8
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 6.4e-14 82.4 70 55.7
VMungo1309G1169 Vigna mungo HOM05D000561 ORTHO05D432855 7.1e-13 79.0 85 64.7


User provided reference genes

Program Settings