Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 3.0e-58 228.4 123 100.0
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.7e-53 212.6 126 94.4
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 8.7e-50 200.3 130 86.2
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 5.3e-47 191.0 128 84.4
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 9.9e-46 186.8 126 79.4
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 2.4e-39 165.6 127 71.7
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 3.1e-39 165.2 128 73.4
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 2.0e-38 162.5 133 72.9
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.6e-33 144.4 126 68.3
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.6e-32 142.9 123 67.5
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.8e-32 142.1 126 61.9
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 6.2e-32 141.0 126 68.3
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 9.0e-31 137.1 130 64.6
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 9.0e-31 137.1 126 63.5
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.2e-30 136.7 126 62.7
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.5e-30 136.3 121 65.3
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.5e-30 136.3 124 64.5
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-30 136.0 121 65.3
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 2.6e-30 135.6 102 73.5
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.5e-30 134.8 120 64.2
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 4.5e-30 134.8 124 62.9
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.0e-29 133.7 132 61.4
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.0e-29 133.7 126 61.1
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.7e-29 132.9 126 63.5
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.7e-29 132.9 123 63.4
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.9e-29 132.1 100 74.0
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.8e-29 131.7 99 72.7
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.9e-29 131.3 101 70.3
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 4.9e-29 131.3 99 73.7
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 6.5e-29 131.0 126 64.3
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 1.1e-28 130.2 99 72.7
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.4e-28 129.8 126 61.9
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.4e-28 129.8 126 63.5
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.4e-28 129.8 129 60.5
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.4e-28 129.8 123 61.0
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.9e-28 129.4 126 63.5
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.9e-28 129.4 120 61.7
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.9e-28 129.4 128 57.8
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 1.9e-28 129.4 120 65.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.9e-28 129.4 126 63.5
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.9e-28 129.4 99 71.7
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.5e-28 129.0 128 60.9
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.5e-28 129.0 99 73.7
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.2e-28 128.6 118 64.4
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 3.2e-28 128.6 124 62.1
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.2e-28 128.6 128 63.3
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 4.2e-28 128.3 126 63.5
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 4.2e-28 128.3 124 60.5
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 5.5e-28 127.9 124 62.1
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 5.5e-28 127.9 125 61.6
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.5e-28 127.9 125 61.6
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.3e-28 127.1 125 61.6
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 9.3e-28 127.1 124 63.7
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.2e-27 126.7 126 61.1
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.2e-27 126.7 126 56.3
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.6e-27 126.3 119 62.2
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 3.5e-27 125.2 126 59.5
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 3.5e-27 125.2 124 59.7
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-27 125.2 102 66.7
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-27 125.2 124 59.7
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-27 125.2 124 59.7
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.5e-27 125.2 124 62.9
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 4.6e-27 124.8 127 59.8
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.0e-27 124.4 129 58.9
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.9e-27 124.0 124 60.5
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.9e-27 124.0 125 60.8
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 7.9e-27 124.0 106 66.0
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.0e-26 123.6 126 62.7
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.0e-26 123.6 130 58.5
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.3e-26 123.2 117 59.8
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.3e-26 123.2 117 59.8
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.3e-26 123.2 122 59.0
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.3e-26 123.2 125 57.6
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.3e-26 122.5 126 58.7
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.3e-26 122.5 126 58.7
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.3e-26 122.5 99 68.7
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 2.3e-26 122.5 118 61.9
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 2.3e-26 122.5 127 57.5
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 3.0e-26 122.1 125 58.4
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 3.9e-26 121.7 127 58.3
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 3.9e-26 121.7 101 70.3
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.1e-26 121.3 124 60.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 5.1e-26 121.3 122 59.0
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 6.7e-26 120.9 94 70.2
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 6.7e-26 120.9 126 59.5
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 8.7e-26 120.6 130 57.7
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.1e-25 120.2 101 69.3
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 124 58.9
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 124 58.9
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.9e-25 119.4 125 58.4
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.9e-25 119.4 124 58.1
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 2.5e-25 119.0 97 68.0
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 2.5e-25 119.0 107 66.4
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 4.3e-25 118.2 98 68.4
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 4.3e-25 118.2 113 63.7
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.3e-25 118.2 126 59.5
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 5.7e-25 117.9 120 61.7
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 5.7e-25 117.9 117 59.8
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.4e-25 117.5 124 57.3
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 7.4e-25 117.5 118 60.2
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 7.4e-25 117.5 124 59.7
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 7.4e-25 117.5 126 58.7
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.7e-25 117.1 124 58.1
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.7e-25 117.1 124 58.9
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.3e-24 116.7 123 59.3
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.3e-24 116.7 98 66.3
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 59.4
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.3e-24 116.7 118 59.3
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 1.3e-24 116.7 101 65.3
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.3e-24 116.7 126 57.9
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.6e-24 116.3 98 68.4
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.6e-24 116.3 98 68.4
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.2e-24 115.9 128 59.4
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.2e-24 115.9 128 59.4
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.2e-24 115.9 128 59.4
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.8e-24 115.5 131 55.0
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 2.8e-24 115.5 119 58.8
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 3.7e-24 115.2 123 56.1
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 3.7e-24 115.2 123 56.1
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.7e-24 115.2 126 58.7
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 4.8e-24 114.8 122 57.4
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.1e-23 113.6 116 61.2
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.8e-23 112.8 120 55.0
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.8e-23 112.8 106 63.2
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.8e-23 112.8 120 61.7
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.4e-23 112.5 101 64.4
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.4e-23 112.5 101 64.4
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.4e-23 112.5 99 62.6
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 3.1e-23 112.1 101 64.4
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 6.9e-23 110.9 122 59.0
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 117 59.0
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.2e-22 110.2 130 59.2
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 7.6e-22 107.5 128 51.6
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.0e-21 107.1 113 57.5
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.7e-21 106.3 126 54.0
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 3.8e-21 105.1 123 56.1
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.5e-21 104.4 129 51.9
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 8.5e-21 104.0 121 55.4
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 8.5e-21 104.0 123 51.2
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 2.5e-20 102.4 109 58.7
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.2e-19 100.1 122 53.3
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.7e-19 99.0 123 53.7
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 7.9e-19 97.4 119 51.3
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.0e-18 95.5 126 49.2
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.9e-18 95.1 106 54.7
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.9e-17 92.8 119 50.4
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.3e-17 92.0 109 50.5
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.7e-16 89.7 120 48.3
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 6.3e-16 87.8 126 45.2
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 6.3e-16 87.8 93 57.0
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 6.3e-16 87.8 120 48.3
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.4e-15 85.9 115 45.2
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 6.9e-15 84.3 73 64.4
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 3.4e-14 82.0 124 48.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 1.3e-13 80.1 50 86.0
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.9e-12 76.3 92 50.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 9.4e-12 73.9 51 76.5
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 3.6e-11 72.0 110 45.5
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 3.0e-10 68.9 75 57.3
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 5.1e-10 68.2 93 45.2
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 8.2e-08 60.8 100 45.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 7.7e-06 54.3 71 45.1


User provided reference genes

Program Settings