Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 1.5e-127 459.5 229 100.0
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 9.6e-127 456.8 229 99.1
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 9.6e-127 456.8 229 99.1
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.1e-125 453.4 229 98.7
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 2.0e-124 449.1 229 97.4
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 2.0e-124 449.1 229 97.8
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.6e-124 448.7 229 97.4
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 96.5
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 96.5
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 96.9
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 96.9
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 96.5
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 96.1
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 94.8
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 94.8
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.2e-122 441.8 227 94.7
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 3.2e-122 441.8 227 95.2
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 93.9
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 94.8
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 94.3
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 94.3
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 93.9
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 7.1e-122 440.7 227 94.7
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 94.3
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.2e-121 439.9 227 95.6
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 93.4
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.6e-121 439.5 227 94.7
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 93.9
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 93.9
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 93.4
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 2.1e-121 439.1 227 94.3
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.6e-121 438.0 229 93.0
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 6.0e-121 437.6 229 93.0
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 93.8
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 93.4
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 93.4
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 93.4
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 94.3
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 92.6
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.3e-120 436.4 227 93.4
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.3e-120 436.4 229 92.6
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 93.4
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 5.1e-120 434.5 229 93.0
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 5.1e-120 434.5 229 91.3
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.6e-120 434.1 227 93.4
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 6.6e-120 434.1 227 93.0
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.5e-119 433.0 227 93.0
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.9e-119 432.6 229 90.8
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 4.3e-119 431.4 227 92.5
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.3e-118 429.9 227 92.5
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.3e-118 429.9 227 93.0
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 91.6
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.8e-118 428.7 229 91.7
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.8e-118 428.7 227 92.5
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 3.6e-118 428.3 229 91.7
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 91.2
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 8.1e-118 427.2 227 91.2
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.1e-117 426.8 229 90.4
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 90.3
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.8e-117 426.0 227 91.6
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 4.0e-117 424.9 227 89.9
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 9.0e-117 423.7 229 90.8
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 2.0e-116 422.5 229 90.0
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 5.8e-116 421.0 227 90.7
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 5.8e-116 421.0 220 92.3
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 7.6e-116 420.6 227 89.0
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.2e-115 419.1 227 89.4
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 2.9e-115 418.7 227 90.3
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 3.8e-115 418.3 229 89.5
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 3.8e-115 418.3 229 89.5
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 3.8e-115 418.3 229 89.5
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 3.8e-115 418.3 229 89.5
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 3.8e-115 418.3 229 89.5
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 4.9e-115 417.9 229 90.4
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 8.4e-115 417.2 229 89.1
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 1.1e-114 416.8 229 90.0
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.1e-114 414.1 227 90.3
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 9.3e-114 413.7 229 87.8
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.6e-113 412.9 227 88.1
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 3.5e-113 411.8 229 87.3
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 87.8
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 87.3
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 90.4
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 7.9e-113 410.6 238 86.1
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 1.8e-112 409.5 229 85.2
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 3.0e-112 408.7 229 86.9
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 3.0e-112 408.7 229 87.3
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 3.9e-112 408.3 229 86.9
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 3.9e-112 408.3 229 86.9
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 84.7
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.5e-111 406.4 229 86.5
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 9.6e-111 403.7 256 80.1
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 1.6e-110 402.9 226 85.4
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 4.8e-110 401.4 226 85.0
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 6.9e-109 397.5 227 84.6
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 9.9e-108 393.7 227 83.7
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.9e-106 389.4 227 81.9
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 7.1e-106 387.5 202 94.1
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 3.5e-105 385.2 202 93.1
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 7.9e-105 384.0 203 93.1
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 2.5e-103 379.0 227 78.9
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 7.4e-103 377.5 201 92.0
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 7.4e-103 377.5 229 82.5
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.1e-101 373.6 229 79.9
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.0e-100 369.4 227 75.8
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 2.0e-100 369.4 210 82.4
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 3.4e-100 368.6 200 89.5
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 5.8e-100 367.9 229 74.7
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 5.8e-100 367.9 229 74.7
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.1e-98 363.6 190 95.3
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 5.5e-98 361.3 219 82.2
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 7.1e-98 360.9 191 93.2
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 9.3e-98 360.5 250 75.6
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 1.2e-97 360.1 229 78.2
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.2e-97 360.1 190 92.6
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 4.6e-97 358.2 233 79.0
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 5.1e-96 354.8 191 91.6
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 3.3e-95 352.1 227 78.9
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 3.3e-95 352.1 187 94.1
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 6.3e-94 347.8 185 94.1
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 9.0e-93 344.0 226 72.1
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.0e-91 340.5 185 90.3
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.0e-88 330.5 226 74.3
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 8.5e-83 310.8 160 94.4
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 3.2e-82 308.9 164 93.9
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 2.7e-81 305.8 355 49.9
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.0e-75 287.3 162 86.4
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.3e-69 265.0 162 77.2
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.5e-58 229.6 120 91.7
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 2.1e-57 226.5 154 69.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.1e-57 224.9 131 80.2
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.3e-35 154.1 140 58.6
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 7.1e-29 131.7 71 88.7
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 5.2e-24 115.5 77 68.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.1e-18 97.8 124 50.0
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.5e-18 97.4 152 41.4
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 86.7
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 5.8e-15 85.5 81 54.3
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 52 69.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 4.2e-13 79.3 79 51.9
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 7.3e-10 68.6 49 65.3
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 3.6e-09 66.2 82 50.0
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 5.8e-07 58.9 26 100.0


User provided reference genes

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