Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 1.7e-108 397.5 199 100.0
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 2.5e-107 393.7 199 98.5
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 7.2e-99 365.5 199 92.0
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 6.8e-81 305.8 206 76.2
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 9.8e-80 302.0 200 76.0
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 2.4e-78 297.4 191 77.5
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 6.4e-71 272.7 205 70.2
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 4.1e-70 270.0 205 70.7
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 1.6e-69 268.1 205 69.8
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 2.5e-67 260.8 204 67.2
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 2.1e-66 257.7 205 65.9
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 1.9e-59 234.6 201 62.7
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 4.0e-57 226.9 191 63.9
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 2.6e-56 224.2 205 61.0
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 1.7e-55 221.5 205 57.1
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 6.4e-55 219.5 205 58.0
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 8.3e-55 219.2 204 56.4
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 9.2e-54 215.7 205 57.1
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 1.2e-53 215.3 204 56.9
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 2.1e-53 214.5 205 57.6
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 1.7e-52 211.5 204 55.4
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 6.6e-52 209.5 205 54.6
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 2.5e-51 207.6 205 56.1
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 3.3e-51 207.2 200 55.5
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 2.1e-50 204.5 205 52.7
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 6.2e-50 203.0 192 55.7
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 8.1e-50 202.6 192 55.7
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.4e-49 201.8 192 55.2
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 2.4e-49 201.1 205 61.0
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 7.6e-48 196.1 200 55.0
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.7e-47 194.9 192 54.2
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.2e-47 194.5 206 53.4
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 2.2e-47 194.5 206 53.4
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 2.9e-47 194.1 206 51.9
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 3.8e-47 193.7 192 53.6
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 6.4e-47 193.0 206 52.4
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 3.2e-46 190.7 205 50.7
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 1.6e-45 188.3 203 52.7
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.1e-43 182.2 200 52.0
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 1.1e-43 182.2 200 52.0
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 2.5e-43 181.0 200 52.0
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 2.5e-43 181.0 193 52.8
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 5.6e-43 179.9 206 48.5
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 1.6e-42 178.3 202 47.5
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 2.1e-42 177.9 196 52.0
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 4.7e-42 176.8 203 47.8
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 8.1e-42 176.0 203 48.8
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 5.3e-41 173.3 207 48.3
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 9.0e-41 172.6 201 44.8
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 9.0e-41 172.6 202 48.0
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 9.0e-41 172.6 206 47.1
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 2.6e-40 171.0 203 48.3
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 5.8e-40 169.9 199 47.7
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 7.6e-40 169.5 193 48.7
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 7.6e-40 169.5 200 49.5
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 2.2e-39 167.9 199 48.2
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 4.9e-39 166.8 202 46.5
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 1.4e-38 165.2 203 46.8
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 1.4e-38 165.2 203 46.8
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 3.2e-38 164.1 198 48.0
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 3.2e-38 164.1 200 46.0
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 3.5e-37 160.6 207 43.0
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 1.5e-35 155.2 202 44.1
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 2.8e-34 151.0 199 39.7
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 1.8e-33 148.3 199 42.2
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 3.8e-31 140.6 155 47.7
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 1.9e-30 138.3 173 45.1
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 3.2e-30 137.5 197 43.7
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 1.2e-29 135.6 205 39.5
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 6.7e-28 129.8 110 56.4
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 1.5e-27 128.6 114 54.4
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 3.3e-27 127.5 185 42.2
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 7.4e-27 126.3 198 41.4
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 3.1e-25 120.9 205 40.5
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 1.6e-21 108.6 85 62.4
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 1.6e-21 108.6 85 62.4
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 2.7e-21 107.8 200 34.0
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 1.0e-20 105.9 85 55.3
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 1.1e-19 102.4 203 38.9
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 1.3e-18 99.0 153 37.3
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 1.0e-15 89.4 58 65.5
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.3e-15 89.0 85 51.8
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 1.3e-15 89.0 85 44.7
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 1.7e-15 88.6 144 36.8
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 2.2e-15 88.2 85 51.8
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 7.1e-14 83.2 86 46.5
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 5.7e-11 73.6 136 33.1
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 1.8e-09 68.6 168 28.0
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 4.1e-09 67.4 169 27.8
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 5.3e-09 67.0 168 27.4
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 5.3e-09 67.0 168 28.0
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 5.3e-09 67.0 168 28.0
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.3e-09 67.0 183 27.9
Duzib264G1293 Durio zibethinus HOM05D000891 ORTHO05D000761 6.9e-09 66.6 162 30.9
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 9.0e-09 66.2 168 28.0
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 1.5e-08 65.5 167 26.3
Duzib147G0693 Durio zibethinus HOM05D000891 ORTHO05D000761 2.6e-08 64.7 147 30.6
SalBow2G1681 Salvia bowleyana HOM05D000891 ORTHO05D000761 2.2e-07 61.6 107 34.6
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 2.2e-07 61.6 107 34.6
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 8.5e-07 59.7 196 28.1
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 8.5e-07 59.7 162 29.6
Gohir.D12G065400 Gossypium hirsutum HOM05D000891 ORTHO05D000761 1.1e-06 59.3 162 27.8
Gorai.008G068700 Gossypium raimondii HOM05D000891 ORTHO05D000761 1.1e-06 59.3 162 27.8
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 2.5e-06 58.2 116 31.0
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 3.2e-06 57.8 193 25.9
FAN19G1656 Fragaria x ananassa HOM05D000891 ORTHO05D000761 3.2e-06 57.8 140 31.4
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.2e-06 57.4 183 26.8
TWI79G0736 Tripterygium wilfordii HOM05D007455 ORTHO05D009431 4.2e-06 57.4 148 29.1
FvH4_1g13650 Fragaria vesca HOM05D000891 ORTHO05D000761 5.5e-06 57.0 118 31.4
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.5e-06 57.0 194 25.3
Cpa.g.sc353.5 Carica papaya HOM05D000891 ORTHO05D000761 7.2e-06 56.6 161 27.3
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 7.2e-06 56.6 107 30.8
MBI05_g33300_MAGBIO Magnolia biondii HOM05D006556 ORTHO05D008146 7.2e-06 56.6 184 25.5
Potri.005G125400 Populus trichocarpa HOM05D000891 ORTHO05D000761 7.2e-06 56.6 184 26.6
Lalb_Chr05g0214861 Lupinus albus HOM05D006556 ORTHO05D008146 9.4e-06 56.2 110 27.3
HPP92_005106 Vanilla planifolia HOM05D006556 ORTHO05D008146 9.4e-06 56.2 102 34.3


User provided reference genes

Program Settings