Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 0.0e+00 1301.2 718 100.0
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 7.3e-298 1026.9 724 81.6
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 3.2e-229 798.9 736 67.1
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 2.0e-210 736.5 767 61.7
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 3.0e-187 659.4 748 56.3
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 4.3e-181 639.0 758 57.5
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 2.9e-177 626.3 759 55.5
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 2.4e-176 623.2 762 56.2
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 3.1e-163 579.7 793 52.5
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 5.6e-149 532.3 790 50.0
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.1e-144 518.1 776 50.4
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 1.5e-141 507.7 730 50.5
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 9.9e-138 495.0 818 47.4
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.1e-136 491.5 785 48.4
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 3.8e-129 466.5 776 45.4
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 2.1e-127 460.7 681 48.5
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 4.1e-123 446.4 710 46.9
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 1.5e-122 444.5 751 44.9
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 2.0e-122 444.1 671 46.8
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 3.6e-119 433.3 777 42.3
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 1.3e-118 431.4 759 45.2
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 3.9e-118 429.9 644 47.5
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 6.7e-118 429.1 812 42.2
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 8.7e-118 428.7 813 41.7
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 7.7e-114 415.6 793 42.1
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 8.5e-113 412.1 692 44.8
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 1.6e-111 407.9 757 43.3
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.8e-110 404.4 783 42.8
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 3.9e-110 403.3 769 43.7
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 2.0e-109 401.0 719 43.9
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 1.2e-106 391.7 760 40.4
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 3.4e-106 390.2 820 40.4
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 5.0e-105 386.3 706 40.1
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 1.4e-104 384.8 784 38.9
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 9.4e-104 382.1 809 39.7
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.6e-103 381.3 707 42.1
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.4e-102 378.3 753 42.4
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 1.8e-102 377.9 634 42.4
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 1.1e-101 375.2 751 41.9
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 1.3e-100 371.7 754 41.6
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 3.7e-100 370.2 671 40.2
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 1.6e-98 364.8 606 44.1
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 4.5e-98 363.2 795 39.9
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 3.8e-97 360.1 755 40.8
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 8.0e-95 352.4 779 41.2
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.2e-93 348.6 787 38.2
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.7e-92 344.7 746 37.9
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 7.0e-91 339.3 786 37.2
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 2.9e-89 334.0 836 38.0
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 5.0e-89 333.2 658 41.2
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 1.9e-88 331.3 825 38.2
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 5.5e-88 329.7 790 38.0
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 9.4e-88 328.9 828 37.4
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 9.4e-88 328.9 588 42.0
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.2e-87 328.6 829 37.0
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 1.0e-86 325.5 698 37.8
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 4.0e-86 323.6 785 37.6
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 2.6e-85 320.9 776 38.5
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 2.2e-84 317.8 802 36.4
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 2.2e-84 317.8 775 37.7
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 1.4e-83 315.1 776 37.5
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 1.2e-82 312.0 770 37.1
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 2.0e-82 311.2 770 37.8
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 3.3e-80 303.9 797 37.6
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 9.5e-80 302.4 690 39.3
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 5.7e-77 293.1 681 38.3
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 7.5e-77 292.7 693 38.4
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 2.2e-76 291.2 520 43.5
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 5.4e-75 286.6 785 35.5
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 9.2e-75 285.8 669 39.2
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 1.6e-74 285.0 641 40.1
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 3.3e-72 277.3 608 42.3
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 8.9e-70 269.2 651 38.1
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 3.4e-69 267.3 779 35.9
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 4.4e-69 266.9 762 35.7
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 1.4e-67 261.9 777 36.4
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 4.1e-67 260.4 598 39.5
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.6e-66 258.5 805 36.9
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 3.0e-65 254.2 679 35.8
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 3.9e-65 253.8 706 37.3
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 4.7e-63 246.9 621 39.5
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 8.0e-63 246.1 628 38.1
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 1.2e-61 242.3 810 35.2
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 7.5e-61 239.6 550 36.7
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 7.5e-61 239.6 550 36.7
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 9.8e-61 239.2 711 35.2
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 1.1e-59 235.7 816 34.7
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 3.0e-57 227.6 292 49.3
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.1e-56 225.7 665 33.1
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 1.9e-56 224.9 669 36.6
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 3.3e-56 224.2 638 37.3
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 3.3e-56 224.2 638 37.3
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 4.3e-56 223.8 827 33.6
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 5.6e-56 223.4 550 35.8
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 4.0e-54 217.2 632 36.6
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 1.2e-53 215.7 677 33.5
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 3.2e-51 207.6 775 31.7
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 1.1e-48 199.1 714 34.6
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 7.3e-48 196.4 773 29.6
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 3.6e-47 194.1 643 31.4
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 3.4e-45 187.6 639 32.7
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 5.6e-40 170.2 523 37.3
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 1.3e-36 159.1 623 29.4
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.7e-36 158.7 441 35.8
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 4.0e-30 137.5 775 28.8
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.0e-29 135.2 489 31.1
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 1.5e-24 119.0 199 42.2
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 1.4e-22 112.5 405 33.6
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 4.5e-21 107.5 674 27.4
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 4.5e-21 107.5 625 27.5
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 1.5e-16 92.4 178 39.9
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.1e-14 86.3 75 61.3
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 2.5e-08 65.1 169 37.3
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 7.4e-08 63.5 740 24.5
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 7.4e-08 63.5 740 24.5


User provided reference genes

Program Settings