Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 4.1e-176 621.3 317 100.0
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 1.1e-144 516.9 351 81.2
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 2.6e-122 442.6 351 73.8
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.7e-121 439.9 359 73.0
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 1.7e-49 200.7 316 44.6
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 2.5e-48 196.8 330 42.4
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 4.2e-48 196.1 205 56.1
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.2e-42 177.9 234 50.9
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 7.7e-42 175.3 321 42.1
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 2.3e-38 163.7 312 39.4
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 2.6e-37 160.2 386 37.3
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 4.4e-37 159.5 245 43.3
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 1.7e-33 147.5 234 41.0
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.4e-30 137.9 175 43.4
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 5.2e-30 136.0 254 38.6
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 5.2e-30 136.0 182 43.4
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 2.6e-29 133.7 189 42.9
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 1.3e-28 131.3 181 42.5
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.3e-28 131.3 190 39.5
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 4.8e-28 129.4 191 41.9
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.1e-27 128.3 185 41.1
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.4e-27 127.9 250 39.6
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 7.0e-27 125.6 185 43.2
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 2.0e-26 124.0 268 33.2
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 5.9e-26 122.5 402 31.1
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.0e-25 121.7 255 37.6
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.7e-25 120.9 183 42.6
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 2.3e-25 120.6 179 41.3
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 2.9e-25 120.2 187 41.2
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 5.0e-25 119.4 352 33.0
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 6.5e-25 119.0 188 38.8
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.1e-24 118.2 256 33.6
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 1.5e-24 117.9 173 41.0
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 2.5e-24 117.1 214 34.1
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.2e-24 116.7 173 37.6
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 4.2e-24 116.3 252 34.1
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 5.5e-24 115.9 181 39.2
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 1.6e-23 114.4 185 37.8
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 2.8e-23 113.6 304 31.9
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.0e-22 111.7 337 32.0
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.3e-22 110.5 238 34.5
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 5.2e-22 109.4 193 37.3
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 6.8e-22 109.0 209 38.3
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 6.8e-22 109.0 260 35.4
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 8.8e-22 108.6 176 37.5
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 1.5e-21 107.8 196 38.3
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 2.0e-21 107.5 189 39.2
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 2.0e-21 107.5 255 32.9
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 2.0e-21 107.5 331 29.3
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 3.4e-21 106.7 186 35.5
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 5.7e-21 105.9 350 30.0
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 7.5e-21 105.5 213 35.7
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 7.5e-21 105.5 162 37.0
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.7e-20 104.4 168 40.5
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 3.7e-20 103.2 253 32.8
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 3.7e-20 103.2 293 29.4
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 3.7e-20 103.2 268 31.0
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 4.9e-20 102.8 236 33.9
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 4.9e-20 102.8 255 34.5
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 4.9e-20 102.8 362 28.2
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 6.3e-20 102.4 202 35.1
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 8.3e-20 102.1 209 34.4
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 8.3e-20 102.1 351 29.1
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 1.1e-19 101.7 208 39.4
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.4e-19 100.5 349 28.1
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 3.1e-19 100.1 238 32.8
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 4.1e-19 99.8 371 28.8
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 4.1e-19 99.8 371 28.8
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.4e-19 99.4 279 32.3
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 9.2e-19 98.6 329 27.7
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 1.2e-18 98.2 215 33.0
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 1.6e-18 97.8 220 32.7
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 1.6e-18 97.8 215 33.0
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.6e-18 97.8 153 40.5
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.0e-18 97.4 275 32.4
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 2.0e-18 97.4 260 30.0
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 5.9e-18 95.9 213 37.1
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 2.3e-17 94.0 279 32.6
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.9e-17 93.6 274 31.8
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 2.9e-17 93.6 347 29.7
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 3.8e-17 93.2 197 36.0
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 3.8e-17 93.2 316 33.2
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 6.6e-17 92.4 350 27.7
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.1e-16 91.7 232 34.1
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.1e-16 91.7 178 35.4
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.5e-16 91.3 228 32.9
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.5e-16 91.3 178 34.8
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 1.5e-16 91.3 158 32.9
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.9e-16 90.9 198 35.4
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 3.3e-16 90.1 240 32.9
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 5.6e-16 89.4 234 32.9
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 9.5e-16 88.6 172 35.5
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 9.5e-16 88.6 252 31.3
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.2e-15 88.2 172 34.9
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 1.6e-15 87.8 331 30.2
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.6e-15 87.8 271 29.5
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 8.0e-15 85.5 165 43.0
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 8.0e-15 85.5 244 29.9
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.8e-14 84.3 183 38.8
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 2.3e-14 84.0 154 40.3
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 3.0e-14 83.6 254 29.5
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 1.2e-13 81.6 179 33.5
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 1.5e-13 81.3 172 33.1
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 7.5e-13 79.0 330 27.9
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 1.3e-12 78.2 273 28.2
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 1.7e-09 67.8 271 26.6
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.7e-09 67.8 192 29.7
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 2.5e-08 63.9 215 30.2
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 2.8e-07 60.5 124 37.1
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 4.7e-07 59.7 79 45.6
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 6.2e-07 59.3 90 42.2
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 8.0e-07 58.9 175 30.3
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.3e-06 57.4 78 43.6
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 4.0e-06 56.6 76 43.4
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 4.0e-06 56.6 90 40.0
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 5.2e-06 56.2 86 45.3
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 6.8e-06 55.8 305 25.6
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 6.8e-06 55.8 75 44.0
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 8.9e-06 55.5 80 43.8


User provided reference genes

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