Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 0.0e+00 1415.6 721 100.0
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 0.0e+00 1157.1 723 85.6
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 4.3e-266 921.4 709 73.6
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 6.1e-252 874.4 715 72.0
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 1.1e-176 624.4 746 56.4
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 2.5e-173 613.2 698 55.6
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 2.4e-168 596.7 710 53.5
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 1.7e-166 590.5 732 53.1
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 6.0e-159 565.5 730 52.5
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 3.0e-158 563.1 734 51.2
VMungo0647G1459 Vigna mungo HOM05D007378 ORTHO05D007577 5.1e-150 535.8 684 52.3
Lalb_Chr08g0246161 Lupinus albus HOM05D007378 ORTHO05D007577 9.3e-144 515.0 634 54.6
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 4.6e-143 512.7 678 51.8
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 2.4e-139 500.4 678 51.5
Phvul.001G006800 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 2.3e-134 483.8 674 49.7
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 9.1e-131 471.9 738 46.7
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 9.4e-128 461.8 733 46.4
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 1.3e-124 451.4 660 48.8
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 4.1e-123 446.4 630 48.3
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 1.6e-103 381.3 656 43.8
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 8.8e-102 375.6 648 44.8
Psat6g003040 Pisum sativum HOM05D007378 ORTHO05D007577 2.6e-101 374.0 602 44.9
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 1.8e-91 341.3 744 37.6
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 8.0e-87 325.9 747 37.1
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 1.4e-86 325.1 775 35.2
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 1.5e-85 321.6 738 36.6
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 2.0e-77 294.7 784 35.5
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 7.5e-77 292.7 681 36.6
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 2.9e-76 290.8 664 36.3
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 1.6e-74 285.0 809 33.4
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 3.5e-74 283.9 747 35.3
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 3.0e-73 280.8 815 34.5
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 1.6e-71 275.0 681 35.5
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 7.5e-69 266.2 698 35.1
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 2.9e-68 264.2 814 34.0
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 6.4e-68 263.1 785 32.9
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 7.1e-67 259.6 681 34.2
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 4.6e-66 256.9 727 32.0
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 4.6e-66 256.9 682 34.9
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 1.7e-65 255.0 685 34.7
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 2.3e-65 254.6 732 32.7
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 6.6e-65 253.1 809 32.5
Dinv39514 Davidia involucrata HOM05D007378 ORTHO05D007577 6.2e-63 246.5 694 33.3
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 6.2e-63 246.5 784 31.0
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 1.1e-62 245.7 797 31.0
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 4.0e-62 243.8 619 35.5
FAN20G0665 Fragaria x ananassa HOM05D007378 ORTHO05D007577 1.2e-61 242.3 720 32.2
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 2.0e-61 241.5 729 34.2
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 2.2e-60 238.0 810 32.2
FAN15G3724 Fragaria x ananassa HOM05D007378 ORTHO05D007577 1.2e-58 232.3 793 31.1
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 2.7e-58 231.1 727 33.7
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 7.8e-58 229.6 663 32.4
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 5.1e-57 226.9 670 34.0
TAR381G0696 Trochodendron aralioides HOM05D007378 ORTHO05D007577 2.5e-56 224.6 694 34.0
FAN27G0575 Fragaria x ananassa HOM05D007378 ORTHO05D007577 2.1e-55 221.5 764 31.3
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 6.2e-55 219.9 727 32.3
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 5.4e-51 206.8 761 31.1
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 1.3e-49 202.2 633 32.5
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 6.2e-47 193.4 710 30.8
PGR031G0679 Punica granatum HOM05D007378 ORTHO05D007577 2.6e-45 188.0 731 30.9
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 2.9e-44 184.5 543 33.3
Rhsim07G0247100 Rhododendron simsii HOM05D007378 ORTHO05D007577 8.4e-44 183.0 702 30.2
MBI05_g30742_MAGBIO Magnolia biondii HOM05D007378 ORTHO05D007577 2.4e-43 181.4 759 29.6
vmacro21724 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 4.0e-38 164.1 533 31.5
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 2.0e-37 161.8 710 30.0
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 5.5e-35 153.7 659 29.7
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 1.6e-34 152.1 742 28.7
Duzib041G0283 Durio zibethinus HOM05D007378 ORTHO05D007577 2.1e-34 151.8 398 33.7
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 7.9e-34 149.8 673 28.5
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 2.3e-33 148.3 672 26.8
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 1.1e-32 146.0 688 27.5
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 1.9e-32 145.2 701 29.2
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 1.1e-30 139.4 674 29.1
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 6.9e-30 136.7 664 28.9
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 1.5e-29 135.6 695 28.6
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 2.0e-29 135.2 697 29.3
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 4.9e-28 130.6 275 39.6
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 7.1e-27 126.7 263 38.8
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 2.7e-26 124.8 635 28.7
AUR62033831 Chenopodium quinoa HOM05D007378 ORTHO05D007577 6.0e-26 123.6 704 26.0
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 2.3e-25 121.7 297 36.4
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 4.3e-24 117.5 403 31.8
SalBow7G4715 Salvia bowleyana HOM05D007378 ORTHO05D007577 3.1e-22 111.3 527 29.8
PSO700G0360 Papaver somniferum HOM05D007378 ORTHO05D007577 4.1e-22 110.9 759 27.4
Aqoxy5G01785 Aquilegia oxysepala HOM05D007378 ORTHO05D007577 5.3e-22 110.5 703 26.7
Cc10_g01700 Coffea canephora HOM05D007378 ORTHO05D007577 1.2e-21 109.4 695 26.9
PSO170G0005 Papaver somniferum HOM05D007378 ORTHO05D007577 5.9e-21 107.1 694 25.8
Oeu020868.1 Olea europaea HOM05D007378 ORTHO05D007577 5.0e-20 104.0 615 26.3
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 2.5e-19 101.7 224 37.1
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 2.7e-18 98.2 655 25.2
TPR.G35411 Trifolium pratense HOM05D000001 ORTHO05D000003 3.6e-18 97.8 104 56.7
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 2.3e-17 95.1 625 25.8
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 1.9e-16 92.0 659 25.6
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 4.3e-16 90.9 584 26.7
AUR62035752 Chenopodium quinoa HOM05D007378 ORTHO05D007577 4.3e-16 90.9 671 25.3
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 5.7e-16 90.5 527 26.8
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 3.7e-15 87.8 501 25.5
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 1.8e-14 85.5 661 25.3
vmacro04350 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 1.8e-14 85.5 212 32.1
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 1.0e-12 79.7 557 27.1
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 5.0e-12 77.4 631 24.4
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 5.0e-12 77.4 591 25.2
BolC6t40007H Brassica oleracea HOM05D010473 ORTHO05D007577 3.6e-10 71.2 595 25.9
SGA_v2.0_scaffold92G28233 Striga asiatica HOM05D007378 ORTHO05D007577 3.6e-10 71.2 564 22.9
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 1.4e-09 69.3 180 37.2
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 3.9e-09 67.8 122 42.6
TPR.G31883 Trifolium pratense HOM05D007378 ORTHO05D007577 5.1e-09 67.4 115 41.7
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 3.3e-08 64.7 172 35.5
Lj4A25T50 Lonicera japonica HOM05D007378 ORTHO05D007577 4.4e-08 64.3 167 36.5
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 1.3e-07 62.8 176 36.4
BraA07t31661Z Brassica rapa HOM05D010473 ORTHO05D007577 1.3e-07 62.8 442 24.7
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 8.2e-07 60.1 192 34.4
CSS0034917 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.4e-06 59.3 109 34.9
TPR.G31885 Trifolium pratense HOM05D001130 ORTHO05D013423 1.4e-06 59.3 63 49.2
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 1.8e-06 58.9 250 33.2
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 2.4e-06 58.5 147 38.1
ATR0152G004 Amborella trichopoda HOM05D007378 ORTHO05D007577 9.1e-06 56.6 114 36.0


User provided reference genes

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