Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G024200 Glycine max HOM05D007760 ORTHO05D008337 5.4e-145 517.7 272 100.0
Glyma.04G024000 Glycine max HOM05D007760 ORTHO05D008337 3.4e-99 365.5 282 73.4
Phvul.009G017200 Phaseolus vulgaris HOM05D007760 ORTHO05D008337 5.2e-79 298.5 272 66.5
VMungo1309G0539 Vigna mungo HOM05D007760 ORTHO05D008337 4.8e-77 292.0 270 66.3
Lj1g0003650 Lotus japonicus HOM05D007760 ORTHO05D008337 9.8e-46 188.0 279 45.2
Lalb_Chr23g0266151 Lupinus albus HOM05D007760 ORTHO05D008337 6.6e-42 175.3 281 45.6
Lalb_Chr11g0061901 Lupinus albus HOM05D007760 ORTHO05D008337 1.5e-33 147.5 281 40.9
Lalb_Chr14g0369911 Lupinus albus HOM05D007760 ORTHO05D008337 1.6e-27 127.5 313 34.8
Medtr1g025290 Medicago truncatula HOM05D007760 ORTHO05D008337 1.0e-26 124.8 268 34.7
arahy.Tifrunner.gnm1.ann1.WD1IN2 Arachis hypogaea HOM05D007760 ORTHO05D008337 3.0e-26 123.2 336 34.5
arahy.Tifrunner.gnm1.ann1.EU98QJ Arachis hypogaea HOM05D007760 ORTHO05D008337 6.6e-26 122.1 335 32.8
Lalb_Chr24g0398711 Lupinus albus HOM05D007760 ORTHO05D008337 8.7e-26 121.7 311 34.1
Lalb_Chr22g0354321 Lupinus albus HOM05D007760 ORTHO05D008337 5.3e-23 112.5 335 32.5
TPR.G20837 Trifolium pratense HOM05D007760 ORTHO05D008337 1.4e-20 104.4 315 30.8
Manes.18G013300 Manihot esculenta HOM05D007760 ORTHO05D008337 4.2e-20 102.8 330 33.6
TPR.G434 Trifolium pratense HOM05D007760 ORTHO05D008337 7.1e-20 102.1 191 37.7
Oeu027538.2 Olea europaea HOM05D007760 ORTHO05D008337 1.6e-19 100.9 284 31.7
TAR625G0557 Trochodendron aralioides HOM05D007760 ORTHO05D008337 6.0e-19 99.0 300 32.0
Oeu046271.1 Olea europaea HOM05D007760 ORTHO05D008337 1.0e-18 98.2 294 31.0
Dinv31848 Davidia involucrata HOM05D007760 ORTHO05D008337 1.3e-18 97.8 310 32.3
Dinv39521 Davidia involucrata HOM05D007760 ORTHO05D008337 3.0e-18 96.7 222 35.6
Psat6g002760 Pisum sativum HOM05D007760 ORTHO05D008337 3.0e-18 96.7 281 33.8
Nitab4.5_0009651g0030 Nicotiana tabacum HOM05D007760 ORTHO05D008337 5.1e-18 95.9 284 29.2
Ciclev10001832m.g Citrus clementina HOM05D007760 ORTHO05D008337 6.7e-18 95.5 321 32.4
Gohir.A06G003800 Gossypium hirsutum HOM05D007760 ORTHO05D008337 8.7e-18 95.1 271 33.6
CSS0044946 Camellia sinensis var. sinensis HOM05D007760 ORTHO05D008337 3.3e-17 93.2 299 30.8
Psat6g002720 Pisum sativum HOM05D007760 ORTHO05D008337 1.3e-16 91.3 273 32.6
RhsimUnG0065900 Rhododendron simsii HOM05D007760 ORTHO05D008337 1.6e-16 90.9 302 31.8
Gorai.010G004000 Gossypium raimondii HOM05D007760 ORTHO05D008337 6.2e-16 89.0 273 31.9
Gohir.D06G006700 Gossypium hirsutum HOM05D007760 ORTHO05D008337 8.1e-16 88.6 275 31.6
Sopen04g035090 Solanum pennellii HOM05D021694 ORTHO05D008337 8.1e-16 88.6 289 30.8
MSTRG.24243 Avicennia marina HOM05D007760 ORTHO05D008337 1.1e-15 88.2 302 30.1
Thecc.08G044900 Theobroma cacao HOM05D007760 ORTHO05D008337 1.1e-15 88.2 327 29.1
Duzib116G0858 Durio zibethinus HOM05D007760 ORTHO05D008337 1.4e-15 87.8 320 29.4
Gorai.010G004100 Gossypium raimondii HOM05D007760 ORTHO05D008337 1.8e-15 87.4 284 31.0
Potri.005G239800 Populus trichocarpa HOM05D007760 ORTHO05D008337 2.4e-15 87.0 344 30.2
Solyc04g081480.3 Solanum lycopersicum HOM05D021694 ORTHO05D008337 2.4e-15 87.0 291 30.6
Psat6g002840 Pisum sativum HOM05D007760 ORTHO05D008337 9.0e-15 85.1 281 32.0
Peaxi162Scf00438g00084 Petunia axillaris HOM05D021694 ORTHO05D008337 2.0e-14 84.0 219 32.0
Haze_22637 Corylus avellana HOM05D007760 ORTHO05D008337 4.5e-14 82.8 204 36.3
Gohir.A06G003700 Gossypium hirsutum HOM05D007760 ORTHO05D008337 5.8e-14 82.4 286 32.5
SGA_v2.0_scaffold11G05919 Striga asiatica HOM05D007760 ORTHO05D008337 9.9e-14 81.6 299 29.1
Medtr1g025310 Medicago truncatula HOM05D007760 ORTHO05D008337 1.3e-13 81.3 302 28.1
Rhsim06G0021400 Rhododendron simsii HOM05D007760 ORTHO05D008337 1.3e-13 81.3 297 29.3
CiPaw.07G149400 Carya illinoinensis HOM05D007760 ORTHO05D008337 1.7e-13 80.9 285 31.2
Ca_13430_v3 Cicer arietinum L. HOM05D007760 ORTHO05D008337 1.7e-13 80.9 262 32.4
MD08G1012900 Malus domestica HOM05D015458 ORTHO05D008337 2.2e-13 80.5 319 27.9
FAN20G0648 Fragaria x ananassa HOM05D015458 ORTHO05D008337 2.9e-13 80.1 320 30.0
Gohir.A06G003900 Gossypium hirsutum HOM05D007760 ORTHO05D008337 2.9e-13 80.1 280 29.6
Prupe.1G364900 Prunus persica HOM05D015458 ORTHO05D008337 2.9e-13 80.1 360 28.6
Gohir.D06G006600 Gossypium hirsutum HOM05D007760 ORTHO05D008337 3.8e-13 79.7 286 32.2
Psat6g002560 Pisum sativum HOM05D007760 ORTHO05D008337 3.8e-13 79.7 233 31.8
Manes.05G147200 Manihot esculenta HOM05D007760 ORTHO05D008337 4.9e-13 79.3 324 30.2
Psat6g002640 Pisum sativum HOM05D007760 ORTHO05D008337 4.9e-13 79.3 156 39.7
RhsimUnG0066000 Rhododendron simsii HOM05D007760 ORTHO05D008337 4.9e-13 79.3 277 31.0
MSTRG.1190 Avicennia marina HOM05D007760 ORTHO05D008337 6.4e-13 79.0 302 29.1
Cfa013954 Carpinus fangiana HOM05D007760 ORTHO05D008337 6.4e-13 79.0 290 31.4
QL02p011665 Quercus lobata HOM05D007760 ORTHO05D008337 6.4e-13 79.0 263 31.6
Atru.chr13.288 Acer truncatum HOM05D007760 ORTHO05D008337 1.1e-12 78.2 307 31.9
ClCG08G014270 Citrullus lanatus HOM05D016278 ORTHO05D008337 1.1e-12 78.2 246 31.7
Duzib041G0564 Durio zibethinus HOM05D007760 ORTHO05D008337 1.1e-12 78.2 323 28.5
TAR381G0719 Trochodendron aralioides HOM05D007760 ORTHO05D008337 1.9e-12 77.4 327 28.7
FAN27G2463 Fragaria x ananassa HOM05D015458 ORTHO05D008337 3.2e-12 76.6 320 29.4
Ca_13429_v3 Cicer arietinum L. HOM05D007760 ORTHO05D008337 5.5e-12 75.9 258 31.8
CsaV3_2G029560 Cucumis sativus L. HOM05D016278 ORTHO05D008337 5.5e-12 75.9 293 29.0
SalBow8G4233 Salvia bowleyana HOM05D007760 ORTHO05D008337 5.5e-12 75.9 197 35.0
Gorai.010G003900 Gossypium raimondii HOM05D007760 ORTHO05D008337 9.3e-12 75.1 286 31.1
FvH4_2g38410 Fragaria vesca HOM05D015458 ORTHO05D008337 1.2e-11 74.7 178 35.4
CiPaw.08G066600 Carya illinoinensis HOM05D007760 ORTHO05D008337 1.6e-11 74.3 292 29.5
MBI05_g33714_MAGBIO Magnolia biondii HOM05D007760 ORTHO05D008337 1.6e-11 74.3 300 29.3
FAN15G2338 Fragaria x ananassa HOM05D015458 ORTHO05D008337 2.1e-11 73.9 318 28.3
RcHm_v2.0_Chr6g0302891 Rosa chinensis HOM05D015458 ORTHO05D008337 2.1e-11 73.9 184 32.6
Potri.002G021900 Populus trichocarpa HOM05D007760 ORTHO05D008337 4.6e-11 72.8 295 29.8
Rhsim07G0247700 Rhododendron simsii HOM05D007760 ORTHO05D008337 4.6e-11 72.8 186 33.3
SalBow7G2592 Salvia bowleyana HOM05D007760 ORTHO05D008337 4.6e-11 72.8 270 30.0
Migut.C00840 Erythranthe guttata HOM05D007760 ORTHO05D008337 2.3e-10 70.5 311 26.0
Migut.N03163 Erythranthe guttata HOM05D007760 ORTHO05D008337 3.0e-10 70.1 299 29.8
Nitab4.5_0025981g0010 Nicotiana tabacum HOM05D007760 ORTHO05D008337 3.0e-10 70.1 164 33.5
vmacro22892 Vaccinium macrocarpon HOM05D007760 ORTHO05D008337 3.0e-10 70.1 288 30.2
Actinidia15424 Actinidia chinensis HOM05D007760 ORTHO05D008337 6.7e-10 68.9 276 30.8
MELO3C011015.2 Cucumis melo HOM05D016278 ORTHO05D008337 6.7e-10 68.9 289 28.7
Sabra05G0185300 Salix brachista HOM05D007760 ORTHO05D008337 8.7e-10 68.6 239 32.2
Cpa.g.sc26.48 Carica papaya HOM05D007760 ORTHO05D008337 1.9e-09 67.4 159 33.3
Sed0012610 Sechium edule HOM05D016278 ORTHO05D008337 2.5e-09 67.0 277 27.8
Nn5g29094 Nelumbo nucifera HOM05D007760 ORTHO05D008337 3.3e-09 66.6 350 25.7
Medtr3g115630 Medicago truncatula HOM05D007760 ORTHO05D008337 4.8e-08 62.8 140 35.7
Duzib093G0245 Durio zibethinus HOM05D007760 ORTHO05D008337 8.1e-08 62.0 200 29.0
COL.COLO4_26143 Corchorus olitorius HOM05D007760 ORTHO05D008337 1.1e-07 61.6 313 28.8
CAN.G311.33 Capsicum annuum HOM05D021694 ORTHO05D008337 4.0e-07 59.7 163 33.1
Nitab4.5_0000192g0190 Nicotiana tabacum HOM05D021694 ORTHO05D008337 3.4e-06 56.6 96 37.5


User provided reference genes

Program Settings