Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G019000 Glycine max HOM05D008020 ORTHO05D010140 6.7e-44 180.3 89 100.0
Glyma.04G018700 Glycine max HOM05D008020 ORTHO05D010140 2.0e-40 168.7 89 96.6
VMungo1309G2936 Vigna mungo HOM05D008020 ORTHO05D010140 3.9e-36 154.5 85 88.2
Medtr3g115170 Medicago truncatula HOM05D008020 ORTHO05D010140 6.7e-36 153.7 89 86.5
Phvul.009G021900 Phaseolus vulgaris HOM05D008020 ORTHO05D010140 1.4e-33 146.0 86 83.7
Ca_15441_v3 Cicer arietinum L. HOM05D008020 ORTHO05D010140 1.7e-31 139.0 90 85.6
Lj1g0023017 Lotus japonicus HOM05D008020 ORTHO05D010140 2.2e-31 138.7 90 78.9
Psat5g011800 Pisum sativum HOM05D008020 ORTHO05D010140 5.5e-30 134.0 90 77.8
Lalb_Chr11g0061691 Lupinus albus HOM05D008020 ORTHO05D010140 1.2e-29 132.9 91 81.3
Nn6g31749 Nelumbo nucifera HOM05D008020 ORTHO05D010140 2.3e-28 128.6 88 73.9
arahy.Tifrunner.gnm1.ann1.IQ4KFY Arachis hypogaea HOM05D008020 ORTHO05D010140 7.5e-27 123.6 92 73.9
Actinidia29785 Actinidia chinensis HOM05D008020 ORTHO05D010140 2.8e-26 121.7 94 68.1
Haze_22756 Corylus avellana HOM05D008020 ORTHO05D010140 2.4e-25 118.6 92 68.5
TAR625G0930 Trochodendron aralioides HOM05D008020 ORTHO05D010140 5.3e-25 117.5 69 84.1
Rhsim06G0008300 Rhododendron simsii HOM05D008020 ORTHO05D010140 4.5e-24 114.4 97 62.9
CDE05G0785 Ceratophyllum demersum HOM05D008020 ORTHO05D010140 6.5e-23 110.5 90 65.6
Cfa014061 Carpinus fangiana HOM05D008020 ORTHO05D010140 1.1e-22 109.8 69 78.3
COL.COLO4_00185 Corchorus olitorius HOM05D008020 ORTHO05D010140 5.5e-22 107.5 91 62.6
COL.COLO4_03997 Corchorus olitorius HOM05D008020 ORTHO05D010140 9.4e-22 106.7 91 62.6
Cpa.g.sc26.209 Carica papaya HOM05D008020 ORTHO05D010140 1.2e-21 106.3 90 67.8
TWI56G1414 Tripterygium wilfordii HOM05D008020 ORTHO05D010140 1.2e-21 106.3 91 62.6
Manes.05G135100 Manihot esculenta HOM05D008020 ORTHO05D010140 1.6e-21 105.9 90 64.4
Oeu056212.1 Olea europaea HOM05D008020 ORTHO05D010140 1.6e-21 105.9 95 61.1
Gorai.002G118600 Gossypium raimondii HOM05D008020 ORTHO05D010140 4.7e-21 104.4 95 58.9
Thecc.08G057500 Theobroma cacao HOM05D008020 ORTHO05D010140 6.1e-21 104.0 94 63.8
Gohir.D01G093200 Gossypium hirsutum HOM05D008020 ORTHO05D010140 1.4e-20 102.8 95 57.9
Gohir.A01G106700 Gossypium hirsutum HOM05D008020 ORTHO05D010140 1.8e-20 102.4 95 57.9
PSO210G7351 Papaver somniferum HOM05D008020 ORTHO05D010140 4.0e-20 101.3 90 60.0
Duzib041G0109 Durio zibethinus HOM05D008020 ORTHO05D010140 5.2e-20 100.9 89 60.7
MD15G1003000 Malus domestica HOM05D008020 ORTHO05D010140 5.2e-20 100.9 74 70.3
Migut.C00948 Erythranthe guttata HOM05D008020 ORTHO05D010140 8.8e-20 100.1 75 70.7
Migut.C00952 Erythranthe guttata HOM05D008020 ORTHO05D010140 8.8e-20 100.1 75 70.7
Lsat_1_v5_gn_9_44980 Lactuca sativa HOM05D008020 ORTHO05D010140 1.5e-19 99.4 75 65.3
ClCG11G018630 Citrullus lanatus HOM05D008020 ORTHO05D010140 9.8e-19 96.7 89 58.4
Eucgr.F03547 Eucalyptus grandis HOM05D008020 ORTHO05D010140 9.8e-19 96.7 72 69.4
ATR0106G002 Amborella trichopoda HOM05D008020 ORTHO05D010140 2.2e-18 95.5 94 59.6
CSS0004036 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 8.3e-18 93.6 73 67.1
EL10Ac1g01981 Beta vulgaris HOM05D008020 ORTHO05D010140 1.8e-17 92.4 76 61.8
Os03g0133100 Oryza sativa ssp. japonica HOM05D008020 ORTHO05D010140 1.8e-17 92.4 80 62.5
CARHR284890 Cardamine hirsuta HOM05D008020 ORTHO05D010140 3.1e-17 91.7 95 53.7
HanXRQChr15g0492771 Helianthus annuus HOM05D008020 ORTHO05D010140 4.1e-17 91.3 107 52.3
Carub.0008s0691 Capsella rubella HOM05D008020 ORTHO05D010140 5.4e-17 90.9 97 53.6
MELO3C017014.2 Cucumis melo HOM05D008020 ORTHO05D010140 9.1e-17 90.1 95 56.8
BcaC01g05309 Brassica carinata HOM05D008020 ORTHO05D010140 1.2e-16 89.7 105 47.6
SalBow7G2452 Salvia bowleyana HOM05D008020 ORTHO05D010140 1.2e-16 89.7 69 66.7
unitig_0.g2104 Utricularia gibba HOM05D008020 ORTHO05D010140 1.6e-16 89.4 92 59.8
Zm00001eb402590 Zea mays HOM05D008020 ORTHO05D010140 1.6e-16 89.4 77 62.3
BolC3t15181H Brassica oleracea HOM05D008020 ORTHO05D010140 2.7e-16 88.6 104 46.2
C03p28110 Brassica napus HOM05D008020 ORTHO05D010140 4.5e-16 87.8 105 46.7
Sp7g08310 Schrenkiella parvula HOM05D008020 ORTHO05D010140 4.5e-16 87.8 104 48.1
BcaB01g03440 Brassica carinata HOM05D008020 ORTHO05D010140 5.9e-16 87.4 105 47.6
Sc26g0004630 Simmondsia chinensis HOM05D008020 ORTHO05D010140 7.7e-16 87.0 89 56.2
ECA232G3495 Erigeron canadensis HOM05D008020 ORTHO05D010140 1.7e-15 85.9 79 59.5
AT5G42290 Arabidopsis thaliana HOM05D008020 ORTHO05D010140 3.3e-14 81.6 112 44.6
Ah.00g000390 Amaranthus hybridus HOM05D008020 ORTHO05D010140 9.5e-14 80.1 76 55.3
RcHm_v2.0_Chr6g0304161 Rosa chinensis HOM05D008020 ORTHO05D010140 9.5e-14 80.1 94 54.3
Thhalv10009649m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 1.2e-13 79.7 106 43.4
SEGI_30631 Sequoiadendron giganteum HOM05D008020 ORTHO05D010140 1.2e-13 79.7 74 58.1
AL8G19330 Arabidopsis lyrata HOM05D008020 ORTHO05D010140 2.1e-13 79.0 109 45.0
AUR62036888 Chenopodium quinoa HOM05D008020 ORTHO05D010140 1.4e-12 76.3 69 62.3
AUR62043558 Chenopodium quinoa HOM05D008020 ORTHO05D010140 1.4e-12 76.3 69 62.3
Thhalv10028031m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 2.3e-12 75.5 109 44.0
Aa31LG9G12400 Aethionema arabicum HOM05D008020 ORTHO05D010140 4.0e-12 74.7 92 54.3
CsaV3_4G037160 Cucumis sativus L. HOM05D008020 ORTHO05D010140 4.0e-12 74.7 92 53.3
FvH4_2g37570 Fragaria vesca HOM05D008020 ORTHO05D010140 4.0e-12 74.7 98 48.0
Atru.chr13.153 Acer truncatum HOM05D008020 ORTHO05D010140 5.2e-12 74.3 73 58.9
FAN15G1770 Fragaria x ananassa HOM05D008020 ORTHO05D010140 8.9e-12 73.6 97 47.4
CSS0008844 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 4.4e-11 71.2 73 56.2
QL02p013929 Quercus lobata HOM05D008020 ORTHO05D010140 8.3e-10 67.0 40 77.5
AagrBONN_evm.TU.Sc2ySwM_368.1603 Anthoceros agrestis HOM05D008020 ORTHO05D010140 1.2e-08 63.2 81 48.1
Ciclev10003459m.g Citrus clementina HOM05D008020 ORTHO05D010140 4.5e-08 61.2 84 46.4
Pp3c20_23510 Physcomitrium patens HOM05D008020 ORTHO05D010140 4.3e-06 54.7 80 45.0


User provided reference genes

Program Settings