Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 4.9e-106 387.9 205 100.0
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 3.0e-95 352.1 205 92.2
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 2.3e-79 299.3 208 77.4
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 2.9e-74 282.3 210 73.8
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 1.2e-59 233.8 208 66.3
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 1.3e-55 220.3 217 60.4
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 1.1e-54 217.2 217 59.0
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 6.9e-52 208.0 210 61.4
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 4.5e-51 205.3 218 56.0
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 3.8e-50 202.2 216 57.4
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 6.5e-50 201.4 215 56.7
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 4.2e-49 198.7 216 57.9
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 1.0e-47 194.1 210 56.2
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 8.8e-47 191.0 205 57.1
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 1.1e-46 190.7 215 56.7
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 1.1e-46 190.7 211 55.0
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 2.0e-46 189.9 210 56.2
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 2.6e-46 189.5 213 56.3
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 3.3e-46 189.1 203 59.1
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 3.3e-46 189.1 211 56.4
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 5.7e-46 188.3 214 57.0
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 9.7e-46 187.6 215 55.3
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 1.7e-45 186.8 209 56.9
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 2.2e-45 186.4 214 54.2
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 2.8e-45 186.0 179 63.1
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 2.8e-45 186.0 179 63.1
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 4.8e-45 185.3 203 60.6
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 6.3e-45 184.9 227 56.4
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 8.2e-45 184.5 211 55.5
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 1.4e-44 183.7 216 55.1
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 1.8e-44 183.3 207 56.5
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 3.1e-44 182.6 212 55.2
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 9.1e-44 181.0 213 54.9
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 1.5e-43 180.3 222 56.3
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 7.7e-43 177.9 214 55.6
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 7.7e-43 177.9 207 53.6
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 7.7e-43 177.9 207 54.6
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.7e-42 176.8 213 53.1
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 6.5e-42 174.9 211 54.0
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 8.5e-42 174.5 211 54.0
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 1.1e-41 174.1 210 54.8
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 1.6e-40 170.2 211 52.6
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.1e-40 169.9 218 52.3
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 4.7e-40 168.7 215 52.1
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 6.1e-40 168.3 206 52.9
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.4e-39 167.2 215 51.6
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.0e-39 166.0 218 51.4
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.0e-39 166.0 218 51.4
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 8.8e-39 164.5 215 51.2
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 2.0e-38 163.3 210 51.9
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 4.4e-38 162.2 211 50.2
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 5.7e-38 161.8 214 51.4
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.7e-37 159.1 193 52.3
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 3.7e-37 159.1 204 52.0
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 4.8e-37 158.7 216 50.9
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 6.3e-37 158.3 210 48.6
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.1e-36 157.5 211 51.2
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 1.4e-36 157.1 210 51.0
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 7.0e-36 154.8 209 48.3
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 1.2e-35 154.1 217 47.9
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 1.2e-35 154.1 211 48.8
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 4.5e-35 152.1 211 49.3
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.3e-34 150.6 209 50.2
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 1.3e-34 150.6 200 51.5
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.8e-34 149.1 193 51.8
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 8.5e-34 147.9 206 49.0
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 8.5e-34 147.9 212 48.6
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 1.5e-33 147.1 211 46.9
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 1.2e-32 144.1 212 48.1
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 1.6e-32 143.7 222 46.8
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 2.1e-32 143.3 210 49.0
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.6e-32 142.5 208 47.6
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 2.0e-30 136.7 212 45.8
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 2.6e-30 136.3 207 46.4
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 3.3e-30 136.0 199 47.7
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 3.3e-30 136.0 212 47.6
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 1.7e-29 133.7 219 46.1
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 1.7e-29 133.7 212 44.3
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 2.2e-29 133.3 187 46.5
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.2e-29 133.3 203 46.8
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 2.2e-29 133.3 212 44.3
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.2e-29 133.3 195 49.7
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 2.8e-29 132.9 213 46.5
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 6.3e-29 131.7 224 44.6
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 8.2e-29 131.3 213 46.0
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.8e-28 130.2 215 45.1
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 4.1e-28 129.0 214 45.3
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 4.1e-28 129.0 214 45.3
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 7.0e-28 128.3 211 43.6
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 7.0e-28 128.3 211 43.6
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 1.6e-27 127.1 196 46.9
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 5.9e-27 125.2 208 44.7
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 7.7e-27 124.8 149 55.0
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.0e-26 124.4 217 43.3
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 1.3e-26 124.0 219 41.1
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 1.3e-26 124.0 214 41.1
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.7e-26 123.6 212 44.8
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 2.9e-26 122.9 222 48.2
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 2.9e-26 122.9 190 46.8
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 2.5e-25 119.8 218 44.5
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 3.2e-25 119.4 247 42.1
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 2.7e-24 116.3 202 43.6
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 3.6e-24 115.9 192 46.4
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 8.8e-23 111.3 204 40.7
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 8.8e-23 111.3 188 46.8
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.5e-22 110.5 203 41.4
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 2.0e-22 110.2 210 44.3
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 5.7e-22 108.6 156 51.3
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 2.2e-21 106.7 161 44.7
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 1.8e-20 103.6 126 54.0
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 5.4e-20 102.1 206 39.8
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.2e-19 100.9 206 39.3
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 1.0e-18 97.8 213 38.5
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 1.3e-18 97.4 210 38.6
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 3.8e-18 95.9 220 40.0
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 6.8e-15 85.1 89 56.2
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 8.8e-15 84.7 174 39.1
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 8.8e-15 84.7 174 39.1
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 8.8e-15 84.7 174 39.1
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 5.7e-14 82.0 180 36.1
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.7e-13 80.5 137 43.1
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 8.3e-13 78.2 180 35.6
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 1.8e-12 77.0 87 51.7
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.8e-12 77.0 168 36.9
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 2.4e-12 76.6 169 37.3
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 1.6e-08 63.9 114 42.1
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 1.6e-08 63.9 114 42.1
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 1.6e-08 63.9 104 44.2
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 3.6e-08 62.8 202 33.7
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 4.7e-08 62.4 204 34.3
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 6.1e-08 62.0 114 40.4
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 6.1e-08 62.0 114 40.4
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 3.0e-07 59.7 149 36.9
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 3.0e-07 59.7 69 53.6
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 3.0e-07 59.7 69 53.6
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 1.5e-06 57.4 75 45.3
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 2.6e-06 56.6 79 43.0
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 3.4e-06 56.2 239 31.0
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 4.4e-06 55.8 75 45.3
ECA238G3056 Erigeron canadensis HOM05D002204 ORTHO05D002875 7.5e-06 55.1 57 52.6


User provided reference genes

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