Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 2.8e-140 501.9 249 100.0
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 2.1e-119 432.6 253 90.5
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 3.4e-101 372.1 239 80.3
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 2.0e-98 362.8 251 76.1
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 4.4e-93 345.1 238 76.5
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 9.2e-91 337.4 235 74.0
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 1.3e-89 333.6 249 71.5
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 5.0e-89 331.6 233 73.0
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 6.6e-89 331.3 236 73.3
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 2.8e-79 299.3 236 67.8
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 2.8e-79 299.3 220 70.5
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 8.1e-79 297.7 237 67.1
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 1.4e-75 287.0 206 68.4
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 5.4e-75 285.0 204 69.6
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 1.6e-74 283.5 203 69.0
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 1.6e-74 283.5 204 67.2
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 6.6e-73 278.1 257 58.4
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 1.9e-72 276.6 198 68.2
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 7.3e-72 274.6 239 56.9
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 7.3e-72 274.6 204 65.7
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 7.3e-72 274.6 261 56.7
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 1.6e-71 273.5 210 65.2
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 6.2e-71 271.6 165 76.4
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 1.1e-70 270.8 205 64.9
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 2.4e-70 269.6 203 63.5
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 3.1e-70 269.2 211 64.9
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 3.1e-70 269.2 164 76.2
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 4.0e-70 268.9 197 68.0
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 1.2e-69 267.3 194 68.0
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 1.5e-69 266.9 202 62.9
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 2.0e-69 266.5 195 68.2
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 2.6e-69 266.2 183 69.9
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 5.8e-69 265.0 195 66.2
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 5.8e-69 265.0 272 53.3
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 7.6e-69 264.6 202 62.9
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 3.8e-68 262.3 195 66.7
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 4.9e-68 261.9 196 66.8
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 4.9e-68 261.9 193 68.4
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 6.4e-68 261.5 222 60.4
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 6.4e-68 261.5 206 64.1
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 1.1e-67 260.8 196 66.8
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 1.4e-67 260.4 212 64.6
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 2.4e-67 259.6 193 67.9
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 4.2e-67 258.8 195 64.1
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 7.1e-67 258.1 218 61.5
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 7.1e-67 258.1 243 53.9
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 1.6e-66 256.9 197 64.5
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 1.6e-66 256.9 206 60.7
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 1.6e-66 256.9 167 71.3
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 2.1e-66 256.5 206 60.7
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 2.7e-66 256.1 218 60.6
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 3.5e-66 255.8 215 61.4
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 3.5e-66 255.8 212 63.7
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 4.6e-66 255.4 202 59.4
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 4.6e-66 255.4 209 63.6
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 6.0e-66 255.0 196 62.2
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 6.0e-66 255.0 171 69.6
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 7.8e-66 254.6 235 57.0
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.0e-65 254.2 209 59.3
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 1.3e-65 253.8 194 66.0
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 1.7e-65 253.4 216 60.6
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 3.9e-65 252.3 244 54.5
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 3.9e-65 252.3 204 61.3
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 1.5e-64 250.4 225 59.1
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 1.5e-64 250.4 194 60.3
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 1.9e-64 250.0 244 54.1
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 2.5e-64 249.6 204 59.3
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 3.3e-64 249.2 239 54.4
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 3.3e-64 249.2 204 60.3
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 4.3e-64 248.8 210 61.0
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 4.3e-64 248.8 219 58.4
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 5.6e-64 248.4 204 60.3
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 1.3e-63 247.3 244 53.7
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 1.3e-63 247.3 204 59.8
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 1.6e-63 246.9 216 58.3
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 1.4e-62 243.8 174 65.5
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.8e-62 243.4 170 67.6
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 2.4e-62 243.0 202 61.9
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 2.4e-62 243.0 168 66.1
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 4.0e-62 242.3 201 58.2
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 5.3e-62 241.9 197 59.4
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 6.9e-62 241.5 193 57.5
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 9.0e-62 241.1 184 63.6
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 2.6e-61 239.6 226 57.1
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.4e-61 239.2 241 56.4
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 5.8e-61 238.4 236 53.4
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.3e-60 237.3 166 66.3
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 2.2e-60 236.5 196 60.7
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 6.4e-60 235.0 198 58.6
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 5.4e-59 231.9 197 61.9
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 5.4e-59 231.9 201 60.7
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 3.5e-58 229.2 223 53.4
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 3.5e-58 229.2 206 57.3
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 4.6e-58 228.8 195 56.4
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 2.1e-55 219.9 202 54.0
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 5.8e-53 211.8 318 41.2
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 1.2e-50 204.1 122 75.4
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 2.1e-47 193.4 204 45.1
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 2.1e-47 193.4 187 54.0
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 2.8e-47 193.0 198 46.0
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 2.3e-41 173.3 187 44.4
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 8.7e-41 171.4 132 64.4
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 5.0e-36 155.6 194 38.1
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 2.8e-31 139.8 160 43.1
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 1.4e-30 137.5 154 50.6
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 1.0e-25 121.3 66 80.3
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 5.7e-24 115.5 129 50.4
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.8e-22 110.5 85 61.2
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 2.4e-22 110.2 212 33.5
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 3.4e-21 106.3 197 31.0
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 4.2e-19 99.4 163 34.4
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 8.0e-18 95.1 115 43.5
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 8.2e-15 85.1 105 44.8
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 3.6e-10 69.7 94 42.6
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 1.2e-08 64.7 32 87.5
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 2.4e-06 57.0 51 56.9


User provided reference genes

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