Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 5.7e-46 187.2 92 100.0
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 9.7e-38 159.8 95 84.2
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 8.2e-29 130.2 87 73.6
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.6e-27 125.9 92 70.7
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 2.0e-27 125.6 93 69.9
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 7.7e-27 123.6 91 67.0
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 2.5e-25 118.6 91 65.9
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 3.2e-25 118.2 89 69.7
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 3.2e-25 118.2 86 69.8
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 5.5e-25 117.5 87 73.6
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 2.1e-24 115.5 86 67.4
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 2.7e-24 115.2 91 71.4
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 2.7e-24 115.2 89 67.4
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 2.7e-24 115.2 86 67.4
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.0e-23 113.2 83 63.9
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.3e-23 112.1 88 65.9
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 2.3e-23 112.1 86 65.1
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 1.2e-22 109.8 92 57.6
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.5e-22 109.4 85 63.5
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 2.0e-22 109.0 92 57.6
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 2.2e-21 105.5 89 61.8
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 5.4e-20 100.9 84 60.7
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 2.7e-19 98.6 77 64.9
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 2.7e-19 98.6 87 62.1
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 3.5e-19 98.2 98 59.2
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 5.9e-19 97.4 87 60.9
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 5.9e-19 97.4 76 61.8
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.5e-17 92.0 89 51.7
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.2e-17 91.3 98 55.1
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 6.8e-15 84.0 93 47.3
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 6.8e-15 84.0 75 56.0
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.0e-14 82.4 80 51.2
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 2.0e-14 82.4 78 50.0
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 2.0e-14 82.4 87 48.3
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 4.4e-14 81.3 105 45.7
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 4.4e-14 81.3 83 49.4
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 7.5e-14 80.5 84 45.2
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 1.7e-13 79.3 90 45.6
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 2.2e-13 79.0 72 52.8
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.8e-13 78.6 103 43.7
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 3.7e-13 78.2 87 48.3
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 4.9e-13 77.8 87 47.1
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.8e-12 75.9 76 48.7
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 3.1e-12 75.1 74 45.9
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 7.0e-12 73.9 77 51.9
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 9.2e-12 73.6 89 48.3
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 9.2e-12 73.6 87 44.8
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 1.2e-11 73.2 104 38.5
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.6e-11 72.8 87 43.7
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 1.6e-11 72.8 64 46.9
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 1.6e-11 72.8 76 48.7
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.7e-11 72.0 91 37.4
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.7e-11 72.0 94 41.5
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.5e-11 71.2 66 60.6
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 4.5e-11 71.2 88 45.5
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.5e-11 71.2 80 42.5
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.5e-11 71.2 87 43.7
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 5.9e-11 70.9 80 42.5
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 5.9e-11 70.9 91 36.3
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 7.8e-11 70.5 80 41.2
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 7.8e-11 70.5 80 46.2
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 7.8e-11 70.5 96 38.5
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 7.8e-11 70.5 77 41.6
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.3e-10 69.7 91 36.3
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.3e-10 69.7 87 43.7
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.7e-10 69.3 80 38.8
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.7e-10 69.3 81 43.2
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.7e-10 69.3 77 45.5
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 2.9e-10 68.6 92 44.6
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.9e-10 68.6 68 50.0
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.9e-10 68.6 68 50.0
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.9e-10 68.6 76 44.7
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 3.8e-10 68.2 80 40.0
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 5.0e-10 67.8 87 41.4
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 6.6e-10 67.4 80 41.2
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 8.6e-10 67.0 96 35.4
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 8.6e-10 67.0 79 45.6
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.1e-09 66.6 78 47.4
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.5e-09 66.2 92 38.0
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.5e-09 66.2 87 40.2
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 1.9e-09 65.9 99 43.4
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.5e-09 65.5 94 38.3
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 3.3e-09 65.1 96 37.5
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 4.3e-09 64.7 91 39.6
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 5.6e-09 64.3 79 41.8
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 5.6e-09 64.3 89 37.1
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 7.3e-09 63.9 71 45.1
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 9.5e-09 63.5 75 38.7
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 9.5e-09 63.5 89 40.4
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 9.5e-09 63.5 70 45.7
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 1.2e-08 63.2 75 41.3
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 1.6e-08 62.8 86 34.9
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 1.6e-08 62.8 81 38.3
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 2.1e-08 62.4 78 41.0
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 2.1e-08 62.4 82 39.0
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 2.1e-08 62.4 85 40.0
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 2.8e-08 62.0 95 40.0
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 2.8e-08 62.0 95 40.0
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.8e-08 62.0 78 39.7
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 3.6e-08 61.6 85 37.6
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 3.6e-08 61.6 47 68.1
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 3.6e-08 61.6 47 68.1
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 3.6e-08 61.6 91 40.7
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 3.6e-08 61.6 74 37.8
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 3.6e-08 61.6 85 40.0
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 6.1e-08 60.8 74 40.5
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 6.1e-08 60.8 102 37.3
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 8.0e-08 60.5 97 40.2
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 8.0e-08 60.5 57 49.1
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 8.0e-08 60.5 91 34.1
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 1.0e-07 60.1 76 43.4
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.0e-07 60.1 93 38.7
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 1.0e-07 60.1 96 36.5
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 1.8e-07 59.3 101 32.7
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 1.8e-07 59.3 87 35.6
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.8e-07 59.3 93 37.6
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.3e-07 58.9 96 37.5
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 2.3e-07 58.9 69 43.5
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 2.3e-07 58.9 58 51.7
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.3e-07 58.9 73 43.8
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 2.3e-07 58.9 105 39.0
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 2.3e-07 58.9 102 36.3
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 3.0e-07 58.5 92 38.0
Medtr3g116395 Medicago truncatula HOM05D007227 ORTHO05D002252 3.0e-07 58.5 54 57.4
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 3.0e-07 58.5 95 40.0
HanXRQChr13g0410611 Helianthus annuus HOM05D017364 ORTHO05D002252 4.0e-07 58.2 98 36.7
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 5.2e-07 57.8 53 49.1
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 6.8e-07 57.4 83 36.1
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 8.9e-07 57.0 72 47.2
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 8.9e-07 57.0 72 47.2
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 8.9e-07 57.0 72 47.2
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 8.9e-07 57.0 72 47.2
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 8.9e-07 57.0 72 47.2
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 8.9e-07 57.0 84 36.9
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.2e-06 56.6 93 36.6
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.2e-06 56.6 93 37.6
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.2e-06 56.6 67 44.8
Cfa007848 Carpinus fangiana HOM05D033200 ORTHO05D022252 1.5e-06 56.2 68 45.6
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.0e-06 55.8 82 39.0
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 2.0e-06 55.8 76 46.1
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 2.6e-06 55.5 72 47.2
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 2.6e-06 55.5 72 47.2
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 2.6e-06 55.5 93 37.6
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.4e-06 55.1 93 34.4
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 3.4e-06 55.1 93 33.3
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 4.4e-06 54.7 87 32.2
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 4.4e-06 54.7 93 36.6
Psat7g116800 Pisum sativum HOM05D010359 ORTHO05D002252 5.7e-06 54.3 71 39.4
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 7.5e-06 53.9 72 45.8
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 7.5e-06 53.9 73 45.2
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 7.5e-06 53.9 72 45.8
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 7.5e-06 53.9 73 45.2
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 7.5e-06 53.9 86 32.6
EL10Ac4g09227 Beta vulgaris HOM05D037403 ORTHO05D002252 9.8e-06 53.5 87 37.9
Cpa.g.sc62.134 Carica papaya HOM05D007227 ORTHO05D002252 9.8e-06 53.5 59 40.7
Lsat_1_v5_gn_7_89361 Lactuca sativa HOM05D007227 ORTHO05D002252 9.8e-06 53.5 55 43.6


User provided reference genes

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