Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 6.6e-63 243.8 118 100.0
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 7.3e-54 213.8 119 90.8
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 1.9e-41 172.6 94 90.4
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 2.6e-35 152.1 94 80.9
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 5.8e-35 151.0 94 76.6
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 1.4e-33 146.4 94 78.7
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 4.6e-32 141.4 94 72.3
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 6.0e-32 141.0 93 75.3
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 9.6e-22 107.1 71 76.1
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 1.6e-21 106.3 94 55.3
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 2.1e-21 105.9 86 64.0
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 6.2e-21 104.4 87 60.9
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 6.2e-21 104.4 87 60.9
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 6.2e-21 104.4 87 60.9
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.4e-20 102.4 87 59.8
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.4e-20 102.4 87 59.8
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 5.3e-20 101.3 95 54.7
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 5.3e-20 101.3 97 55.7
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 9.0e-20 100.5 94 55.3
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 1.5e-19 99.8 97 53.6
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 2.0e-19 99.4 94 56.4
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 2.6e-19 99.0 84 59.5
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.6e-19 99.0 87 60.9
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.4e-19 98.6 96 54.2
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 4.5e-19 98.2 95 56.8
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 4.5e-19 98.2 95 56.8
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 9.9e-19 97.1 104 54.8
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 9.9e-19 97.1 86 64.0
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 1.7e-18 96.3 86 61.6
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 2.2e-18 95.9 113 48.7
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 2.2e-18 95.9 100 51.0
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 3.8e-18 95.1 111 48.6
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 4.9e-18 94.7 94 54.3
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 8.4e-18 94.0 93 57.0
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 1.9e-17 92.8 94 51.1
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 5.4e-17 91.3 94 53.2
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 1.2e-16 90.1 84 58.3
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 4.6e-16 88.2 87 55.2
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 7.9e-16 87.4 84 57.1
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.0e-15 87.0 98 49.0
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 5.1e-15 84.7 98 48.0
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 5.1e-15 84.7 98 48.0
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 6.7e-15 84.3 89 50.6
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 2.5e-14 82.4 103 51.5
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 3.3e-14 82.0 96 49.0
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 4.3e-14 81.6 67 61.2
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 5.6e-14 81.3 94 47.9
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 9.6e-14 80.5 83 55.4
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.3e-13 80.1 89 53.9
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 2.8e-13 79.0 109 46.8
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.4e-12 76.6 85 51.8
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 4.0e-12 75.1 85 50.6
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 9.0e-12 73.9 83 51.8
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.0e-11 72.8 82 52.4
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 3.4e-11 72.0 87 46.0
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 7.6e-11 70.9 72 52.8
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 9.9e-11 70.5 58 62.1
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.7e-10 69.7 70 52.9
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.7e-10 69.7 70 52.9
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 8.4e-10 67.4 81 50.6
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 1.1e-09 67.0 89 47.2
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 3.2e-09 65.5 71 49.3
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 4.2e-09 65.1 91 38.5
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 7.1e-09 64.3 107 36.4
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 9.3e-09 63.9 113 36.3
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 9.3e-09 63.9 113 36.3
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 1.2e-08 63.5 114 36.0
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 2.1e-08 62.8 102 39.2
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 2.7e-08 62.4 113 35.4
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.7e-08 62.4 86 45.3
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 2.7e-08 62.4 109 37.6
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 3.5e-08 62.0 95 45.3
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 4.6e-08 61.6 115 34.8
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 3.0e-07 58.9 81 40.7
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 3.9e-07 58.5 107 36.4
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 3.9e-07 58.5 107 36.4
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 3.9e-07 58.5 58 50.0
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 3.9e-07 58.5 113 34.5
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 1.9e-06 56.2 107 34.6
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 2.5e-06 55.8 109 34.9
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 2.5e-06 55.8 108 34.3
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 2.5e-06 55.8 108 34.3


User provided reference genes

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