Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.4e-57 227.3 260 100.0
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 5.0e-55 218.8 260 95.4
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 2.5e-54 216.5 259 98.1
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 3.2e-54 216.1 263 97.3
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 3.6e-53 212.6 259 94.2
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 2.0e-51 206.8 261 95.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 4.4e-51 205.7 260 91.5
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 4.4e-51 205.7 260 91.5
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 7.4e-51 204.9 264 95.8
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 9.7e-51 204.5 261 90.4
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 9.7e-51 204.5 261 90.4
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.3e-50 204.1 261 90.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 7.0e-49 198.4 263 91.3
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 7.7e-48 194.9 261 90.0
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.0e-47 194.5 261 91.6
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.3e-47 194.1 261 92.3
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.1e-46 191.0 262 92.0
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 5.5e-46 188.7 261 85.4
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 9.4e-46 188.0 263 92.0
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 2.1e-45 186.8 260 85.0
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.8e-44 183.7 259 90.7
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 6.7e-44 181.8 262 89.7
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 8.8e-44 181.4 259 86.1
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.5e-43 180.6 260 85.0
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.5e-43 180.6 262 82.4
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.4e-43 179.1 264 87.1
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.4e-43 179.1 266 87.6
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 6.3e-42 175.3 265 77.7
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.8e-41 173.7 261 84.3
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.0e-39 167.9 279 81.4
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.9e-39 166.4 246 85.0
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 6.5e-39 165.2 259 80.7
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.9e-38 163.7 243 82.3
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.7e-37 159.8 246 83.7
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 2.7e-37 159.8 262 84.0
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.3e-36 156.8 261 78.9
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 1.2e-35 154.5 261 80.8
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.5e-35 154.1 256 77.7
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.5e-35 154.1 260 81.2
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 2.2e-34 150.2 260 81.2
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.1e-33 146.4 258 65.5
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.7e-32 143.3 260 76.5
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.0e-31 141.4 260 79.2
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 5.0e-31 139.0 219 91.3
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.5e-31 138.7 244 79.9
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.1e-30 137.9 266 54.9
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 7.2e-30 135.2 242 74.4
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-29 134.4 251 84.5
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.1e-29 133.7 248 84.7
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.8e-29 133.3 250 84.4
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.8e-29 133.3 250 84.4
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.6e-29 132.9 248 85.1
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 4.7e-29 132.5 246 78.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 8.0e-29 131.7 261 72.8
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 5.2e-28 129.0 245 77.6
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 5.2e-28 129.0 262 79.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.2e-27 127.9 248 76.2
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.5e-27 127.5 249 74.7
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.5e-27 127.5 249 75.9
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 2.0e-27 127.1 239 79.1
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.0e-27 127.1 261 78.5
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.6e-27 126.7 250 76.8
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.6e-27 126.7 271 65.7
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.4e-27 126.3 260 70.8
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 3.4e-27 126.3 245 77.1
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 6.3e-26 122.1 260 73.5
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 1.4e-25 120.9 255 74.5
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 1.8e-25 120.6 260 74.2
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.7e-24 116.7 260 74.2
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 3.5e-24 116.3 244 76.6
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 3.8e-23 112.8 129 93.0
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 5.0e-23 112.5 266 77.4
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 5.6e-22 109.0 213 61.5
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 9.5e-22 108.2 264 43.9
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 1.8e-20 104.0 219 79.5
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.0e-19 100.5 238 74.8
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.6e-19 100.1 252 67.1
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 7.5e-19 98.6 265 67.2
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 9.8e-19 98.2 246 66.3
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.3e-18 97.8 260 71.9
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.9e-18 95.9 244 76.6
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.1e-17 94.7 245 73.1
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 3.2e-17 93.2 243 70.8
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 4.1e-17 92.8 143 80.4
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 5.4e-17 92.4 245 75.9
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 7.0e-17 92.0 134 85.1
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 7.0e-17 92.0 134 85.1
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 7.0e-17 92.0 134 85.1
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.0e-16 90.5 134 85.8
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 7.8e-16 88.6 245 71.8
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.7e-15 87.4 135 84.4
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.9e-15 86.3 244 70.9
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 3.9e-15 86.3 135 83.7
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 8.6e-15 85.1 64 68.8
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 1.1e-14 84.7 332 61.1
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.1e-14 84.7 218 72.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.5e-14 84.3 50 74.0
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.6e-14 82.4 50 70.0
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 7.3e-14 82.0 65 67.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 7.3e-14 82.0 51 70.6
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.8e-13 80.1 51 66.7
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 4.7e-13 79.3 155 72.3
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.2e-13 79.0 48 75.0
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.4e-12 77.8 216 76.4
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 2.3e-12 77.0 237 71.3
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 5.2e-12 75.9 52 65.4
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 5.2e-12 75.9 245 64.5
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 6.8e-12 75.5 52 65.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 6.8e-12 75.5 52 65.4
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 6.8e-12 75.5 50 66.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 6.8e-12 75.5 65 55.4
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 6.8e-12 75.5 245 64.1
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 8.9e-12 75.1 49 65.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 8.9e-12 75.1 49 65.3
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 8.9e-12 75.1 51 68.6
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.2e-11 74.7 44 72.7
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.4e-11 72.8 51 62.7
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 9.8e-11 71.6 47 70.2
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.7e-10 70.9 51 60.8
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 2.9e-10 70.1 47 68.1
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 2.9e-10 70.1 259 66.8
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 3.7e-10 69.7 52 61.5
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.7e-10 69.7 51 62.7
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 6.4e-10 68.9 135 80.0
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 8.3e-10 68.6 51 64.7
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 1.1e-09 68.2 51 78.4
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 7.0e-09 65.5 45 64.4
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.2e-09 65.1 58 53.4
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 9.2e-09 65.1 48 62.5
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.2e-08 64.7 109 91.7
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.1e-08 63.9 51 58.8
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.7e-08 63.5 48 62.5
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.6e-08 62.8 51 58.8
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.6e-08 62.8 51 60.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.6e-08 62.8 43 62.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 6.0e-08 62.4 51 58.8
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 7.8e-08 62.0 34 82.4
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.0e-07 61.6 106 92.5
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.0e-07 61.6 51 58.8
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.7e-07 60.8 51 56.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.3e-07 60.5 46 54.3
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.0e-07 60.1 42 64.3
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.0e-07 60.1 51 56.9
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 5.0e-07 59.3 51 54.9
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 5.0e-07 59.3 48 58.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 8.6e-07 58.5 51 56.9
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 8.6e-07 58.5 51 56.9
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.6e-07 58.5 205 68.8
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 8.6e-07 58.5 51 54.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 8.6e-07 58.5 50 52.0
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.5e-06 57.0 42 59.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 3.3e-06 56.6 43 60.5
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.3e-06 56.6 43 60.5
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.3e-06 56.6 43 60.5
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.3e-06 56.6 43 60.5
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 3.3e-06 56.6 43 60.5
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.3e-06 56.6 35 71.4
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 4.3e-06 56.2 43 58.1
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 9.5e-06 55.1 42 64.3


User provided reference genes

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