Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G002800 Glycine max HOM05D007415 ORTHO05D009324 3.3e-115 418.3 199 100.0
Glyma.04G002800 Glycine max HOM05D007415 ORTHO05D009324 9.3e-94 347.1 202 82.7
VMungo1309G2266 Vigna mungo HOM05D007415 ORTHO05D009324 2.3e-76 289.3 196 71.9
Lj1g0001063 Lotus japonicus HOM05D007415 ORTHO05D009324 1.1e-65 253.8 230 60.4
arahy.Tifrunner.gnm1.ann1.HL0ERI Arachis hypogaea HOM05D007415 ORTHO05D009324 1.1e-59 233.8 212 59.9
arahy.Tifrunner.gnm1.ann1.YL0UD8 Arachis hypogaea HOM05D007415 ORTHO05D009324 2.6e-59 232.6 212 59.4
Cfa006296 Carpinus fangiana HOM05D007415 ORTHO05D009324 9.1e-57 224.2 219 52.5
Psat5g001880 Pisum sativum HOM05D007415 ORTHO05D009324 5.9e-56 221.5 191 58.6
Manes.12G058800 Manihot esculenta HOM05D007415 ORTHO05D009324 3.8e-55 218.8 199 56.8
Medtr3g118090 Medicago truncatula HOM05D007415 ORTHO05D009324 6.5e-55 218.0 200 55.0
Gohir.D07G201100 Gossypium hirsutum HOM05D007415 ORTHO05D009324 1.1e-54 217.2 196 56.1
Gorai.001G225800 Gossypium raimondii HOM05D007415 ORTHO05D009324 1.1e-54 217.2 196 56.1
Oeu058216.1 Olea europaea HOM05D007415 ORTHO05D009324 2.5e-54 216.1 198 53.5
CiPaw.07G119000 Carya illinoinensis HOM05D007415 ORTHO05D009324 1.2e-53 213.8 205 54.6
Potri.014G197700 Populus trichocarpa HOM05D007415 ORTHO05D009324 2.1e-53 213.0 203 53.2
Eucgr.K02344 Eucalyptus grandis HOM05D007415 ORTHO05D009324 2.7e-53 212.6 196 55.1
Prupe.8G267300 Prunus persica HOM05D007415 ORTHO05D009324 2.7e-53 212.6 216 50.5
Ciclev10016323m.g Citrus clementina HOM05D007415 ORTHO05D009324 7.9e-53 211.1 202 53.5
Atru.chr6.3473 Acer truncatum HOM05D007415 ORTHO05D009324 1.4e-52 210.3 200 55.5
COL.COLO4_19724 Corchorus olitorius HOM05D007415 ORTHO05D009324 1.4e-52 210.3 206 54.4
MSTRG.21289 Avicennia marina HOM05D007415 ORTHO05D009324 3.0e-52 209.1 204 51.0
Thecc.01G204000 Theobroma cacao HOM05D007415 ORTHO05D009324 3.0e-52 209.1 200 54.5
Lsat_1_v5_gn_9_15740 Lactuca sativa HOM05D007415 ORTHO05D009324 2.0e-51 206.5 207 51.2
Dinv02951 Davidia involucrata HOM05D007415 ORTHO05D009324 3.3e-51 205.7 204 52.9
Nitab4.5_0011643g0030 Nicotiana tabacum HOM05D007415 ORTHO05D009324 5.7e-51 204.9 194 53.1
PGR044G2664 Punica granatum HOM05D007415 ORTHO05D009324 5.7e-51 204.9 197 53.3
Sopen09g012680 Solanum pennellii HOM05D007415 ORTHO05D009324 9.7e-51 204.1 204 52.0
Migut.D00758 Erythranthe guttata HOM05D007415 ORTHO05D009324 1.7e-50 203.4 195 51.3
HanXRQChr08g0230811 Helianthus annuus HOM05D007415 ORTHO05D009324 3.7e-50 202.2 199 52.8
MD11G1318200 Malus domestica HOM05D007415 ORTHO05D009324 3.7e-50 202.2 200 51.0
Actinidia23816 Actinidia chinensis HOM05D007415 ORTHO05D009324 6.3e-50 201.4 204 50.5
CANSAT11G1932 Cannabis sativa HOM05D007415 ORTHO05D009324 8.2e-50 201.1 200 53.0
Solyc09g018950.3 Solanum lycopersicum HOM05D007415 ORTHO05D009324 1.8e-49 199.9 211 49.8
Phvul.009G118400 Phaseolus vulgaris HOM05D007415 ORTHO05D009324 3.1e-49 199.1 163 65.0
MD03G1298900 Malus domestica HOM05D007415 ORTHO05D009324 4.1e-49 198.7 200 50.0
Nitab4.5_0010771g0010 Nicotiana tabacum HOM05D007415 ORTHO05D009324 1.2e-48 197.2 192 52.6
Peaxi162Scf00424g00066 Petunia axillaris HOM05D007415 ORTHO05D009324 1.6e-48 196.8 201 50.7
CAN.G15.19 Capsicum annuum HOM05D007415 ORTHO05D009324 2.2e-47 193.0 206 49.5
Thhalv10026014m.g Eutrema salsugineum HOM05D007415 ORTHO05D009324 5.5e-46 188.3 210 50.5
CSS0038002 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 7.2e-46 188.0 204 48.5
Rhsim01G0246200 Rhododendron simsii HOM05D007415 ORTHO05D009324 2.1e-45 186.4 198 51.5
MELO3C002194.2 Cucumis melo HOM05D007415 ORTHO05D009324 3.6e-45 185.7 204 48.5
CsaV3_1G007790 Cucumis sativus L. HOM05D007415 ORTHO05D009324 4.7e-45 185.3 204 48.5
TAR636G2599 Trochodendron aralioides HOM05D007415 ORTHO05D009324 4.7e-45 185.3 197 48.7
Sp7g09150 Schrenkiella parvula HOM05D007415 ORTHO05D009324 1.8e-44 183.3 210 46.7
BcaB04g17744 Brassica carinata HOM05D007415 ORTHO05D009324 3.0e-44 182.6 181 48.6
Sed0017664 Sechium edule HOM05D007415 ORTHO05D009324 3.0e-44 182.6 204 48.5
vmacro14670 Vaccinium macrocarpon HOM05D007415 ORTHO05D009324 3.0e-44 182.6 202 48.0
THA.LOC104808823 Tarenaya hassleriana HOM05D007415 ORTHO05D009324 4.0e-44 182.2 199 49.2
BcaC07g37433 Brassica carinata HOM05D007415 ORTHO05D009324 5.2e-44 181.8 181 51.4
C08p09070 Brassica napus HOM05D007415 ORTHO05D009324 5.2e-44 181.8 181 51.4
BolC8t47754H Brassica oleracea HOM05D007415 ORTHO05D009324 5.2e-44 181.8 181 51.4
ClCG01G014510 Citrullus lanatus HOM05D007415 ORTHO05D009324 1.2e-43 180.6 220 46.8
Aa31sc565G30 Aethionema arabicum HOM05D007415 ORTHO05D009324 1.5e-43 180.3 213 46.9
AT4G12760 Arabidopsis thaliana HOM05D007415 ORTHO05D009324 2.0e-43 179.9 196 47.4
Carub.0007s3006 Capsella rubella HOM05D007415 ORTHO05D009324 2.6e-43 179.5 190 48.9
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 2.6e-43 179.5 164 56.1
Cc01_g15740 Coffea canephora HOM05D007415 ORTHO05D009324 7.5e-43 177.9 198 45.5
Sc05g0001580 Simmondsia chinensis HOM05D007415 ORTHO05D009324 9.7e-43 177.6 207 45.9
Aqoxy4G00006 Aquilegia oxysepala HOM05D007415 ORTHO05D009324 1.7e-42 176.8 178 50.6
CSS0018954 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 1.7e-42 176.8 173 53.2
BraA08t32753Z Brassica rapa HOM05D007415 ORTHO05D009324 1.1e-41 174.1 189 48.7
Ca_15292_v3 Cicer arietinum L. HOM05D007415 ORTHO05D009324 3.1e-41 172.6 146 60.3
Nn4g24568 Nelumbo nucifera HOM05D007415 ORTHO05D009324 3.1e-41 172.6 198 47.0
AL9U11890 Arabidopsis lyrata HOM05D007415 ORTHO05D009324 4.1e-41 172.2 206 46.6
SHI10204 Sapria himalayana HOM05D007415 ORTHO05D009324 5.3e-41 171.8 181 49.2
CARHR218100 Cardamine hirsuta HOM05D007415 ORTHO05D009324 2.7e-40 169.5 193 48.2
Cpa.g.sc8.12 Carica papaya HOM05D007415 ORTHO05D009324 4.5e-40 168.7 147 55.8
Lalb_Chr11g0061191 Lupinus albus HOM05D007415 ORTHO05D009324 4.5e-40 168.7 109 70.6
unitig_61.g26009 Utricularia gibba HOM05D007415 ORTHO05D009324 1.0e-39 167.5 195 43.6
A08p07370 Brassica napus HOM05D007415 ORTHO05D009324 3.8e-39 165.6 214 43.0
QL03p044140 Quercus lobata HOM05D007415 ORTHO05D009324 6.5e-39 164.9 314 33.8
SalBow6G5534 Salvia bowleyana HOM05D007415 ORTHO05D009324 1.5e-38 163.7 259 37.8
TWI36G0361 Tripterygium wilfordii HOM05D007415 ORTHO05D009324 9.4e-38 161.0 166 50.6
ECA247G1801 Erigeron canadensis HOM05D007415 ORTHO05D009324 1.2e-37 160.6 163 51.5
PSO675G4429 Papaver somniferum HOM05D007415 ORTHO05D009324 3.6e-37 159.1 206 38.8
Sabra14G0132700 Salix brachista HOM05D007415 ORTHO05D009324 2.3e-36 156.4 175 49.1
Duzib133G1418 Durio zibethinus HOM05D007415 ORTHO05D009324 2.0e-35 153.3 196 44.4
Gohir.A07G194700 Gossypium hirsutum HOM05D007415 ORTHO05D009324 8.3e-34 147.9 147 52.4
Lj1C108T7 Lonicera japonica HOM05D007415 ORTHO05D009324 8.3e-34 147.9 145 50.3
Os05g0417300 Oryza sativa ssp. japonica HOM05D007415 ORTHO05D009324 3.1e-33 146.0 181 41.4
GSVIVG01038257001 Vitis vinifera HOM05D007415 ORTHO05D009324 5.9e-32 141.7 182 39.0
MBI10_g35389_MAGBIO Magnolia biondii HOM05D007415 ORTHO05D009324 1.0e-31 141.0 182 41.8
CDE04G2941 Ceratophyllum demersum HOM05D007415 ORTHO05D009324 1.9e-30 136.7 175 41.7
EL10Ac5g10567 Beta vulgaris HOM05D007415 ORTHO05D009324 7.2e-30 134.8 167 43.7
Hund02818 Selenicereus undatus HOM05D007415 ORTHO05D009324 2.3e-28 129.8 150 45.3
HPP92_001921 Vanilla planifolia HOM05D007415 ORTHO05D009324 3.0e-28 129.4 172 41.9
Duzib138G0016 Durio zibethinus HOM05D007415 ORTHO05D009324 1.2e-27 127.5 175 42.3
AUR62028622 Chenopodium quinoa HOM05D007415 ORTHO05D009324 5.4e-25 118.6 143 44.1
PSO732G0601 Papaver somniferum HOM05D007415 ORTHO05D009324 6.6e-23 111.7 178 38.2
Haze_04514 Corylus avellana HOM05D007415 ORTHO05D009324 1.1e-22 110.9 105 53.3
PGSC0003DMG400020290 Solanum tuberosum HOM05D007415 ORTHO05D009324 1.5e-22 110.5 90 60.0
TPR.G38565 Trifolium pratense HOM05D007415 ORTHO05D009324 3.4e-19 99.4 124 47.6
ATR0743G053 Amborella trichopoda HOM05D007415 ORTHO05D009324 7.5e-19 98.2 178 32.6
Ah.11g050670 Amaranthus hybridus HOM05D007415 ORTHO05D009324 1.7e-15 87.0 221 30.3
AUR62008047 Chenopodium quinoa HOM05D007415 ORTHO05D009324 1.1e-14 84.3 111 41.4
DCAR_017283 Daucus carota HOM05D007415 ORTHO05D009324 1.8e-12 77.0 69 52.2
SMO356G0522 Selaginella moellendorffii HOM05D007415 ORTHO05D009324 4.9e-10 68.9 170 31.8
TPR.G6328 Trifolium pratense HOM05D000001 ORTHO05D009753 7.0e-09 65.1 42 71.4
SalBow2G2324 Salvia bowleyana HOM05D007415 ORTHO05D009324 1.0e-07 61.2 107 35.5
PGSC0003DMG400007530 Solanum tuberosum HOM05D007415 ORTHO05D009324 1.0e-07 61.2 75 40.0


User provided reference genes

Program Settings