Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 7.7e-180 633.6 307 100.0
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 3.3e-130 468.8 302 77.5
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 8.0e-129 464.2 311 75.6
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.2e-127 460.3 312 74.0
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 6.6e-123 444.5 304 73.0
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 1.5e-122 443.4 303 73.6
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 9.5e-122 440.7 289 75.1
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 1.1e-120 437.2 313 70.3
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 7.5e-119 431.0 298 71.5
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 1.3e-118 430.3 296 72.6
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.3e-118 430.3 313 70.0
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 2.2e-118 429.5 298 71.8
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 2.2e-118 429.5 303 71.9
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 2.9e-118 429.1 282 74.5
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 1.9e-117 426.4 302 71.5
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 7.1e-117 424.5 306 70.3
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 7.1e-117 424.5 306 69.3
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 1.6e-116 423.3 310 67.4
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 2.7e-116 422.5 305 68.5
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 3.5e-116 422.2 305 68.9
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 3.5e-116 422.2 292 70.9
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 6.0e-116 421.4 307 69.7
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 7.8e-116 421.0 313 68.7
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 1.7e-115 419.9 286 71.3
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 2.3e-115 419.5 291 69.4
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 2.3e-115 419.5 312 67.6
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 5.1e-115 418.3 313 67.7
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 6.6e-115 417.9 291 69.1
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 8.6e-115 417.5 299 69.2
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 8.6e-115 417.5 302 70.2
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 1.1e-114 417.2 304 67.4
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 7.3e-114 414.5 318 65.7
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 7.3e-114 414.5 314 67.5
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 9.5e-114 414.1 286 71.7
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 2.1e-113 412.9 303 69.3
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 2.8e-113 412.5 305 66.9
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 3.6e-113 412.1 307 68.4
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 4.7e-113 411.8 301 68.1
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 4.7e-113 411.8 311 67.8
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.1e-112 410.6 328 63.4
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 1.4e-112 410.2 304 67.4
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 1.8e-112 409.8 289 69.2
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 3.1e-112 409.1 297 66.7
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 4.0e-112 408.7 291 67.7
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 4.0e-112 408.7 316 67.7
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 5.2e-112 408.3 305 68.5
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 6.8e-112 407.9 338 63.6
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 6.8e-112 407.9 308 66.6
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.2e-111 407.1 302 67.2
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 2.0e-111 406.4 302 67.9
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 7.6e-111 404.4 309 67.3
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 7.6e-111 404.4 306 65.4
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.3e-110 403.7 296 67.2
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 2.2e-110 402.9 309 67.0
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 2.9e-110 402.5 306 65.4
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 3.7e-110 402.1 307 66.8
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 3.7e-110 402.1 306 65.4
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 4.9e-110 401.7 310 66.5
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 6.4e-110 401.4 301 67.1
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 5.4e-109 398.3 312 65.4
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 1.6e-108 396.7 294 66.7
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 2.1e-108 396.4 300 65.3
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 2.7e-108 396.0 343 62.1
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 1.0e-107 394.0 311 65.3
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 1.0e-107 394.0 311 64.3
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.3e-107 393.7 309 65.4
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 1.7e-107 393.3 304 65.1
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 3.0e-107 392.5 278 67.3
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 3.9e-107 392.1 306 65.0
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 6.6e-107 391.3 281 68.0
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 1.1e-106 390.6 284 67.6
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 1.5e-106 390.2 304 65.5
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 5.6e-106 388.3 278 69.8
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 1.2e-105 387.1 396 53.8
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 1.6e-105 386.7 324 60.8
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 1.3e-102 377.1 334 59.6
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 3.8e-102 375.6 276 68.8
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 2.1e-100 369.8 289 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 9.9e-95 350.9 300 58.0
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 7.1e-93 344.7 304 60.9
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 2.1e-92 343.2 240 75.0
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 7.9e-92 341.3 254 67.3
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 3.0e-91 339.3 300 57.7
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 3.0e-91 339.3 323 53.9
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 2.1e-89 333.2 307 56.0
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 4.9e-86 322.0 291 57.4
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 4.8e-81 305.4 344 52.0
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 1.1e-69 267.7 189 70.4
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 2.5e-69 266.5 191 70.7
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 7.9e-68 261.5 278 47.8
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 7.9e-68 261.5 193 68.9
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.3e-67 260.8 181 69.6
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 1.8e-67 260.4 188 71.3
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 1.8e-67 260.4 170 74.7
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 5.7e-66 255.4 186 70.4
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 1.5e-63 247.3 177 66.1
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.9e-61 240.4 288 45.8
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 1.6e-60 237.3 282 42.2
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 8.8e-59 231.5 275 49.5
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.7e-54 217.2 163 63.8
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.0e-47 193.7 146 69.2
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 1.1e-45 188.0 143 68.5
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 4.5e-31 139.4 344 29.1
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 5.9e-31 139.0 322 32.9
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 7.7e-31 138.7 73 79.5
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 4.2e-29 132.9 284 34.2
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 6.3e-25 119.0 98 58.2
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 3.1e-24 116.7 60 81.7
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 2.9e-22 110.2 82 63.4
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 1.9e-21 107.5 138 45.7
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 4.4e-18 96.3 153 42.5
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 4.1e-16 89.7 262 27.1
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 5.2e-11 72.8 152 35.5
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 7.5e-10 68.9 365 25.5
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-09 67.4 68 44.1
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 2.0e-07 60.8 156 28.2


User provided reference genes

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