Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G000966 Glycine max HOM05D006026 ORTHO05D007502 2.1e-111 405.6 192 100.0
Atru.chr5.3501 Acer truncatum HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Actinidia18011 Actinidia chinensis HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Actinidia20559 Actinidia chinensis HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Aa31LG2G14780 Aethionema arabicum HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
AL7G15930 Arabidopsis lyrata HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
AT4G35250 Arabidopsis thaliana HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
arahy.Tifrunner.gnm1.ann1.C9RI5X Arachis hypogaea HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
arahy.Tifrunner.gnm1.ann1.NGL2PI Arachis hypogaea HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
MSTRG.19950 Avicennia marina HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
EL10Ac9g21273 Beta vulgaris HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
BcaB03g11776 Brassica carinata HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
BcaC01g00829 Brassica carinata HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
A08p16240 Brassica napus HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
C03p84930 Brassica napus HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
BolC3t20785H Brassica oleracea HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
BraA08t33594Z Brassica rapa HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
CSS0009314 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
CSS0017921 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
CANSAT25G3515 Cannabis sativa HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Carub.0007s0505 Capsella rubella HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
CARHR243570 Cardamine hirsuta HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Cfa005337 Carpinus fangiana HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Ciclev10028591m.g Citrus clementina HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Cc09_g10600 Coffea canephora HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
COL.COLO4_17947 Corchorus olitorius HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Thhalv10025389m.g Eutrema salsugineum HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
FvH4_2g16360 Fragaria vesca HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
FAN15G0892 Fragaria x ananassa HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
FAN24G0545 Fragaria x ananassa HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
FAN24G2355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
FAN27G0355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Glyma.04G001500 Glycine max HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Gohir.A03G209000 Gossypium hirsutum HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Gohir.D02G230700 Gossypium hirsutum HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Gorai.005G258300 Gossypium raimondii HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Lj1g0012573 Lotus japonicus HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
MBI08_g19978_MAGBIO Magnolia biondii HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
MD05G1131800 Malus domestica HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Medtr3g118430 Medicago truncatula HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Phvul.009G116200 Phaseolus vulgaris HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Psat5g000600 Pisum sativum HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Prupe.8G176300 Prunus persica HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
PGR042G3337 Punica granatum HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
RcHm_v2.0_Chr6g0280111 Rosa chinensis HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Sabra04G0123100 Salix brachista HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Sabra09G0110800 Salix brachista HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Sp7g33020 Schrenkiella parvula HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
Hund06172 Selenicereus undatus HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
SGA_v2.0_scaffold32G13334 Striga asiatica HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
THA.LOC104807393 Tarenaya hassleriana HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
TPR.G38515 Trifolium pratense HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
TWI79G1086 Tripterygium wilfordii HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
VMungo1309G0279 Vigna mungo HOM05D006026 ORTHO05D007502 1.7e-15 87.0 39 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
CAN.G1235.18 Capsicum annuum HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
CiPaw.05G090000 Carya illinoinensis HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Haze_02040 Corylus avellana HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Haze_02283 Corylus avellana HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Dinv41889 Davidia involucrata HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
ECA233G5240 Erigeron canadensis HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Eucgr.G01834 Eucalyptus grandis HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
HanXRQChr02g0049421 Helianthus annuus HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Lsat_1_v5_gn_8_120201 Lactuca sativa HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Lj5A173T64 Lonicera japonica HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Nn6g31746 Nelumbo nucifera HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Nitab4.5_0000783g0230 Nicotiana tabacum HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Nitab4.5_0009888g0010 Nicotiana tabacum HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Os08g0553800 Oryza sativa ssp. japonica HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
PSO541G6277 Papaver somniferum HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
PSO675G4706 Papaver somniferum HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Peaxi162Scf00362g00257 Petunia axillaris HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Pp3c27_8140 Physcomitrium patens HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
SMO011G0028 Selaginella moellendorffii HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Solyc01g112060.4 Solanum lycopersicum HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Sopen01g054110 Solanum pennellii HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
PGSC0003DMG400018657 Solanum tuberosum HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
TAR376G0854 Trochodendron aralioides HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Zm00001eb039850 Zea mays HOM05D006026 ORTHO05D007502 2.2e-15 86.7 39 97.4
Potri.009G143000 Populus trichocarpa HOM05D006026 ORTHO05D007502 3.7e-15 85.9 39 97.4
Lalb_Chr08g0246801 Lupinus albus HOM05D006026 ORTHO05D007502 4.9e-15 85.5 39 97.4
Manes.04G065300 Manihot esculenta HOM05D006026 ORTHO05D007502 4.9e-15 85.5 39 97.4
Sc14g0002380 Simmondsia chinensis HOM05D006026 ORTHO05D007502 4.9e-15 85.5 39 97.4
Thecc.02G047100 Theobroma cacao HOM05D006026 ORTHO05D007502 4.9e-15 85.5 39 97.4
CDE05G1234 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 6.3e-15 85.1 39 97.4
CDE05G3682 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 6.3e-15 85.1 39 97.4
Migut.B00021 Erythranthe guttata HOM05D006026 ORTHO05D007502 6.3e-15 85.1 39 97.4
unitig_748.g7335 Utricularia gibba HOM05D006026 ORTHO05D007502 6.3e-15 85.1 39 97.4
Potri.004G183100 Populus trichocarpa HOM05D006026 ORTHO05D007502 8.3e-15 84.7 39 97.4
Rhsim11G0196300 Rhododendron simsii HOM05D006026 ORTHO05D007502 8.3e-15 84.7 39 97.4
Sed0018198 Sechium edule HOM05D006026 ORTHO05D007502 8.3e-15 84.7 39 97.4
vmacro02320 Vaccinium macrocarpon HOM05D006026 ORTHO05D007502 8.3e-15 84.7 39 97.4
ATR0661G296 Amborella trichopoda HOM05D006026 ORTHO05D007502 1.1e-14 84.3 39 92.3
AUR62012942 Chenopodium quinoa HOM05D006026 ORTHO05D007502 1.1e-14 84.3 39 94.9
AUR62027142 Chenopodium quinoa HOM05D006026 ORTHO05D007502 1.1e-14 84.3 39 94.9
AUR62027145 Chenopodium quinoa HOM05D006026 ORTHO05D007502 1.1e-14 84.3 39 94.9
AUR62029494 Chenopodium quinoa HOM05D006026 ORTHO05D007502 1.1e-14 84.3 39 94.9
GSVIVG01023933001 Vitis vinifera HOM05D006026 ORTHO05D007502 1.1e-14 84.3 39 94.9
Hma1.2p1_0271F.1_g109040 Hydrangea macrophylla HOM05D006026 ORTHO05D007502 1.8e-14 83.6 39 94.9
Hma1.2p1_0271F.1_g109050 Hydrangea macrophylla HOM05D006026 ORTHO05D007502 1.8e-14 83.6 39 94.9
Nn5g30929 Nelumbo nucifera HOM05D006026 ORTHO05D007502 1.8e-14 83.6 39 94.9
HPP92_025949 Vanilla planifolia HOM05D006026 ORTHO05D007502 1.8e-14 83.6 39 94.9
Aqoxy6G01749 Aquilegia oxysepala HOM05D006026 ORTHO05D007502 2.4e-14 83.2 39 94.9
ClCG00G000750 Citrullus lanatus HOM05D006026 ORTHO05D007502 2.4e-14 83.2 39 94.9
ClCG00G001730 Citrullus lanatus HOM05D006026 ORTHO05D007502 2.4e-14 83.2 39 94.9
MELO3C013632.2 Cucumis melo HOM05D006026 ORTHO05D007502 2.4e-14 83.2 39 94.9
CsaV3_6G012790 Cucumis sativus L. HOM05D006026 ORTHO05D007502 2.4e-14 83.2 39 94.9
QL11p054672 Quercus lobata HOM05D006026 ORTHO05D007502 3.1e-14 82.8 39 92.3
DCAR_015673 Daucus carota HOM05D006026 ORTHO05D007502 4.1e-14 82.4 39 92.3
Mapoly0013s0111 Marchantia polymorpha HOM05D006026 ORTHO05D007502 7.0e-14 81.6 39 94.9
Cre02.g142146 Chlamydomonas reinhardtii HOM05D006026 ORTHO05D007502 9.2e-14 81.3 39 92.3
MD10G1137900 Malus domestica HOM05D006026 ORTHO05D007502 1.6e-13 80.5 39 92.3
Hund00343 Selenicereus undatus HOM05D006026 ORTHO05D007502 1.6e-13 80.5 39 92.3
MD10G1136300 Malus domestica HOM05D006026 ORTHO05D007502 5.9e-13 78.6 41 87.8
MCO09G679 Micromonas commoda HOM05D006026 ORTHO05D007502 1.0e-12 77.8 39 87.2
CBR_g37527 Chara braunii HOM05D006026 ORTHO05D007502 3.8e-12 75.9 39 87.2
PRCOL_00003008 Prasinoderma coloniale HOM05D006026 ORTHO05D007502 5.0e-12 75.5 39 79.5
MD10G1137300 Malus domestica HOM05D006026 ORTHO05D007502 5.6e-11 72.0 41 85.4


User provided reference genes

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