Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G243600 Glycine max HOM05D002209 ORTHO05D007926 8.9e-142 506.9 254 100.0
Phvul.002G327300 Phaseolus vulgaris HOM05D002209 ORTHO05D007926 8.7e-129 463.8 254 92.9
Glyma.08G051400 Glycine max HOM05D002209 ORTHO05D007926 2.1e-127 459.1 254 92.5
VMungo0251G3506 Vigna mungo HOM05D002209 ORTHO05D007926 2.0e-125 452.6 254 90.6
Medtr8g106740 Medicago truncatula HOM05D002209 ORTHO05D007926 9.3e-115 417.2 247 83.4
Lj4g0023570 Lotus japonicus HOM05D002209 ORTHO05D007926 3.5e-114 415.2 247 84.6
Lalb_Chr09g0330531 Lupinus albus HOM05D002209 ORTHO05D007926 1.7e-108 396.4 252 80.6
TPR.G12761 Trifolium pratense HOM05D002209 ORTHO05D007926 1.4e-107 393.3 256 77.7
arahy.Tifrunner.gnm1.ann1.X5TZ4V Arachis hypogaea HOM05D002209 ORTHO05D007926 3.2e-107 392.1 250 80.4
arahy.Tifrunner.gnm1.ann1.IWL1UH Arachis hypogaea HOM05D002209 ORTHO05D007926 2.7e-106 389.0 253 79.1
arahy.Tifrunner.gnm1.ann1.A2QZNW Arachis hypogaea HOM05D002209 ORTHO05D007926 3.0e-105 385.6 250 79.2
arahy.Tifrunner.gnm1.ann1.7LX2IS Arachis hypogaea HOM05D002209 ORTHO05D007926 8.7e-105 384.0 255 77.3
Ca_14628_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 6.5e-100 367.9 244 76.6
Cfa019698 Carpinus fangiana HOM05D002209 ORTHO05D007926 4.6e-98 361.7 251 72.5
Thecc.06G020700 Theobroma cacao HOM05D002209 ORTHO05D007926 5.1e-97 358.2 252 72.2
Duzib160G0876 Durio zibethinus HOM05D002209 ORTHO05D007926 1.1e-96 357.1 251 72.1
Manes.14G168500 Manihot esculenta HOM05D002209 ORTHO05D007926 2.0e-96 356.3 254 72.4
QL10p027511 Quercus lobata HOM05D002209 ORTHO05D007926 3.3e-96 355.5 252 73.0
MELO3C002120.2 Cucumis melo HOM05D002209 ORTHO05D007926 1.3e-95 353.6 251 69.3
CsaV3_1G007020 Cucumis sativus L. HOM05D002209 ORTHO05D007926 1.3e-95 353.6 251 69.3
Lalb_Chr16g0387151 Lupinus albus HOM05D002209 ORTHO05D007926 2.2e-95 352.8 222 82.4
Potri.015G041800 Populus trichocarpa HOM05D002209 ORTHO05D007926 1.1e-94 350.5 253 70.4
Atru.chr9.948 Acer truncatum HOM05D002209 ORTHO05D007926 1.8e-94 349.7 249 71.5
CSS0012934 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 9.1e-94 347.4 258 70.2
CSS0018698 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D007926 9.1e-94 347.4 258 70.2
ClCG04G010780 Citrullus lanatus HOM05D002209 ORTHO05D007926 1.5e-93 346.7 247 68.8
Sabra15G0055300 Salix brachista HOM05D002209 ORTHO05D007926 3.4e-93 345.5 253 69.6
CiPaw.15G139100 Carya illinoinensis HOM05D002209 ORTHO05D007926 7.7e-93 344.4 246 72.0
Nitab4.5_0012369g0010 Nicotiana tabacum HOM05D002209 ORTHO05D007926 7.7e-93 344.4 248 69.0
Sc10g0009340 Simmondsia chinensis HOM05D002209 ORTHO05D007926 1.0e-92 344.0 246 69.1
Actinidia18911 Actinidia chinensis HOM05D002209 ORTHO05D007926 1.3e-92 343.6 246 70.7
Ciclev10009263m.g Citrus clementina HOM05D002209 ORTHO05D007926 1.3e-92 343.6 250 68.8
Peaxi162Scf00683g10026 Petunia axillaris HOM05D002209 ORTHO05D007926 1.3e-92 343.6 248 68.1
Actinidia35109 Actinidia chinensis HOM05D002209 ORTHO05D007926 2.2e-92 342.8 246 70.7
Gohir.D06G123100 Gossypium hirsutum HOM05D002209 ORTHO05D007926 2.2e-92 342.8 253 71.1
TAR622G1089 Trochodendron aralioides HOM05D002209 ORTHO05D007926 2.2e-92 342.8 250 70.8
Sopen00g010550 Solanum pennellii HOM05D002209 ORTHO05D007926 3.8e-92 342.0 249 67.9
Gorai.010G143200 Gossypium raimondii HOM05D002209 ORTHO05D007926 5.0e-92 341.7 253 70.8
PGR083G0394 Punica granatum HOM05D002209 ORTHO05D007926 6.5e-92 341.3 245 69.8
Hma1.2p1_1257F.1_g270850 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.1e-91 340.5 251 69.3
PGSC0003DMG400005659 Solanum tuberosum HOM05D002209 ORTHO05D007926 2.5e-91 339.3 249 67.5
Rhsim12G0139900 Rhododendron simsii HOM05D002209 ORTHO05D007926 5.5e-91 338.2 253 69.2
Gohir.A06G114800 Gossypium hirsutum HOM05D002209 ORTHO05D007926 7.2e-91 337.8 253 70.8
TWI81G0293 Tripterygium wilfordii HOM05D002209 ORTHO05D007926 7.2e-91 337.8 248 68.1
Sed0021446 Sechium edule HOM05D002209 ORTHO05D007926 4.7e-90 335.1 248 66.1
CANSAT80G1708 Cannabis sativa HOM05D002209 ORTHO05D007926 6.1e-90 334.7 249 69.5
CANSAT80G2078 Cannabis sativa HOM05D002209 ORTHO05D007926 6.1e-90 334.7 249 69.5
Prupe.5G229800 Prunus persica HOM05D002209 ORTHO05D007926 1.0e-89 334.0 255 67.1
Nitab4.5_0000150g0080 Nicotiana tabacum HOM05D002209 ORTHO05D007926 6.7e-89 331.3 247 65.6
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 8.8e-89 330.9 244 71.7
ECA240G0871 Erigeron canadensis HOM05D002209 ORTHO05D007926 4.4e-88 328.6 246 67.1
SalBow5G1692 Salvia bowleyana HOM05D002209 ORTHO05D007926 5.7e-88 328.2 238 68.9
Migut.L01913 Erythranthe guttata HOM05D002209 ORTHO05D007926 1.3e-87 327.0 240 68.3
Sabra15G0061600 Salix brachista HOM05D002209 ORTHO05D007926 1.7e-87 326.6 288 60.8
Lsat_1_v5_gn_3_114081 Lactuca sativa HOM05D002209 ORTHO05D007926 2.2e-87 326.2 238 68.9
MSTRG.22939 Avicennia marina HOM05D002209 ORTHO05D007926 4.8e-87 325.1 243 68.3
Eucgr.B00853 Eucalyptus grandis HOM05D002209 ORTHO05D007926 4.8e-87 325.1 245 66.9
PSO478G0876 Papaver somniferum HOM05D002209 ORTHO05D007926 4.8e-87 325.1 244 67.2
Nitab4.5_0001158g0030 Nicotiana tabacum HOM05D002209 ORTHO05D007926 6.3e-87 324.7 231 69.7
PSO017G1461 Papaver somniferum HOM05D002209 ORTHO05D007926 3.1e-86 322.4 241 67.2
MBI13_g00575_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D007926 4.1e-86 322.0 243 68.3
SGA_v2.0_scaffold21G09613 Striga asiatica HOM05D002209 ORTHO05D007926 9.1e-86 320.9 250 64.8
THA.LOC104820370 Tarenaya hassleriana HOM05D002209 ORTHO05D007926 2.0e-85 319.7 244 65.6
AT3G18165 Arabidopsis thaliana HOM05D002209 ORTHO05D007926 3.5e-85 318.9 244 64.8
Ah.11g045280 Amaranthus hybridus HOM05D002209 ORTHO05D007926 5.9e-85 318.2 243 66.3
MD00G1160500 Malus domestica HOM05D002209 ORTHO05D007926 7.7e-85 317.8 253 65.2
Solyc03g119010.3 Solanum lycopersicum HOM05D002209 ORTHO05D007926 1.7e-84 316.6 230 67.8
CDE08G0043 Ceratophyllum demersum HOM05D002209 ORTHO05D007926 2.9e-84 315.8 240 64.6
CAN.G1129.32 Capsicum annuum HOM05D002209 ORTHO05D007926 3.8e-84 315.5 248 65.7
BcaB04g20790 Brassica carinata HOM05D002209 ORTHO05D007926 5.0e-84 315.1 243 63.4
Aqoxy3G00431 Aquilegia oxysepala HOM05D002209 ORTHO05D007926 6.5e-84 314.7 253 64.4
BcaC05g28661 Brassica carinata HOM05D002209 ORTHO05D007926 1.1e-83 313.9 251 61.8
C05p47920 Brassica napus HOM05D002209 ORTHO05D007926 1.1e-83 313.9 251 61.8
BolC5t33504H Brassica oleracea HOM05D002209 ORTHO05D007926 1.1e-83 313.9 251 61.8
A05p31590 Brassica napus HOM05D002209 ORTHO05D007926 1.9e-83 313.2 251 61.8
Carub.0003s1789 Capsella rubella HOM05D002209 ORTHO05D007926 1.9e-83 313.2 249 62.7
CARHR093490 Cardamine hirsuta HOM05D002209 ORTHO05D007926 1.9e-83 313.2 244 63.5
BraA05t21994Z Brassica rapa HOM05D002209 ORTHO05D007926 2.5e-83 312.8 251 61.8
AL3G31340 Arabidopsis lyrata HOM05D002209 ORTHO05D007926 4.2e-83 312.0 244 63.1
EL10Ac5g11521 Beta vulgaris HOM05D002209 ORTHO05D007926 5.5e-83 311.6 245 64.5
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 9.4e-83 310.8 246 61.8
BcaC09g48772 Brassica carinata HOM05D002209 ORTHO05D007926 1.2e-82 310.5 246 61.8
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.2e-82 310.5 246 61.8
Thhalv10021375m.g Eutrema salsugineum HOM05D002209 ORTHO05D007926 1.6e-82 310.1 246 61.8
Sp3g16280 Schrenkiella parvula HOM05D002209 ORTHO05D007926 4.7e-82 308.5 244 62.7
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 8.0e-82 307.8 244 61.5
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 8.0e-82 307.8 244 61.5
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.0e-80 303.1 234 65.0
GSVIVG01008385001 Vitis vinifera HOM05D002209 ORTHO05D007926 1.1e-78 297.4 197 74.6
MD14G1233600 Malus domestica HOM05D002209 ORTHO05D007926 9.1e-78 294.3 242 65.3
HanXRQChr03g0090991 Helianthus annuus HOM05D002209 ORTHO05D007926 1.6e-77 293.5 224 66.5
HPP92_026682 Vanilla planifolia HOM05D002209 ORTHO05D007926 1.0e-76 290.8 235 63.0
AUR62033751 Chenopodium quinoa HOM05D002209 ORTHO05D007926 2.9e-76 289.3 269 58.4
Nn2g14536 Nelumbo nucifera HOM05D002209 ORTHO05D007926 5.5e-75 285.0 234 63.7
vmacro16426 Vaccinium macrocarpon HOM05D002209 ORTHO05D007926 2.1e-74 283.1 321 52.3
Hund02335 Selenicereus undatus HOM05D002209 ORTHO05D007926 1.8e-73 280.0 253 58.5
Zm00001eb128260 Zea mays HOM05D002209 ORTHO05D007926 2.3e-73 279.6 245 59.6
DCAR_011381 Daucus carota HOM05D002209 ORTHO05D007926 2.6e-72 276.2 233 61.4
RcHm_v2.0_Chr7g0178821 Rosa chinensis HOM05D002209 ORTHO05D007926 7.5e-72 274.6 244 62.3
unitig_27.g24963 Utricularia gibba HOM05D002209 ORTHO05D007926 1.3e-71 273.9 239 59.8
ATR0068G069 Amborella trichopoda HOM05D002209 ORTHO05D007926 8.3e-71 271.2 237 58.2
FAN08G0602 Fragaria x ananassa HOM05D002209 ORTHO05D007926 5.4e-70 268.5 250 59.2
FAN13G0553 Fragaria x ananassa HOM05D002209 ORTHO05D007926 5.4e-70 268.5 244 60.7
FvH4_5g17030 Fragaria vesca HOM05D002209 ORTHO05D007926 2.7e-69 266.2 244 60.7
Lj9A422G65 Lonicera japonica HOM05D002209 ORTHO05D007926 4.5e-69 265.4 208 67.8
COL.COLO4_07530 Corchorus olitorius HOM05D002209 ORTHO05D007926 2.5e-67 259.6 191 70.7
FAN18G2854 Fragaria x ananassa HOM05D002209 ORTHO05D007926 1.2e-66 257.3 243 59.3
Cc04_g06640 Coffea canephora HOM05D002209 ORTHO05D007926 2.1e-66 256.5 197 65.5
Mapoly0110s0002 Marchantia polymorpha HOM05D002209 ORTHO05D007926 2.3e-65 253.1 232 54.3
Dinv13547 Davidia involucrata HOM05D002209 ORTHO05D007926 1.1e-59 234.2 255 51.8
Pp3c9_17380 Physcomitrium patens HOM05D002209 ORTHO05D007926 2.5e-59 233.0 237 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2039 Anthoceros agrestis HOM05D002209 ORTHO05D007926 3.3e-59 232.6 232 51.3
Psat7g003920 Pisum sativum HOM05D002209 ORTHO05D007926 2.8e-58 229.6 140 82.9
Oeu014368.1 Olea europaea HOM05D002209 ORTHO05D007926 1.2e-56 224.2 163 68.1
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 6.4e-55 218.4 158 71.5
SMO339G0064 Selaginella moellendorffii HOM05D002209 ORTHO05D007926 6.4e-55 218.4 229 48.0
AUR62029954 Chenopodium quinoa HOM05D002209 ORTHO05D007926 3.0e-52 209.5 189 59.3
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 1.4e-49 200.7 231 48.1
HPP92_018005 Vanilla planifolia HOM05D002209 ORTHO05D007926 2.9e-47 193.0 182 53.8
Hma1.2p1_1257F.1_g270860 Hydrangea macrophylla HOM05D002209 ORTHO05D007926 1.2e-45 187.6 138 68.1
SEGI_33728 Sequoiadendron giganteum HOM05D002209 ORTHO05D007926 1.7e-39 167.2 132 63.6
Ca_17308_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 1.2e-32 144.4 85 87.1
Psat7g003960 Pisum sativum HOM05D002209 ORTHO05D007926 1.4e-30 137.5 84 81.0
MCO11G869 Micromonas commoda HOM05D002209 ORTHO05D007926 3.0e-28 129.8 237 35.0
Cre17.g697350 Chlamydomonas reinhardtii HOM05D002209 ORTHO05D007926 5.1e-28 129.0 227 35.7
C05p44850 Brassica napus HOM05D002209 ORTHO05D007926 2.9e-23 113.2 79 67.1
BolC5t33212H Brassica oleracea HOM05D002209 ORTHO05D007926 2.9e-23 113.2 79 67.1
AUR62029953 Chenopodium quinoa HOM05D002209 ORTHO05D007926 7.3e-19 98.6 82 58.5
Ca_29797_v3 Cicer arietinum L. HOM05D002209 ORTHO05D007926 3.6e-18 96.3 61 77.0
A10p11050 Brassica napus HOM05D002209 ORTHO05D033214 7.1e-14 82.0 61 62.3
BolC6t38528H Brassica oleracea HOM05D002209 ORTHO05D033214 2.9e-07 60.1 46 58.7
BraA10t43197Z Brassica rapa HOM05D002209 ORTHO05D033214 8.4e-07 58.5 47 57.4


User provided reference genes

Program Settings