Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1497.6 732 100.0
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1401.3 732 92.2
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1393.3 732 91.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1392.1 732 91.4
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1384.8 733 91.4
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1384.0 732 90.7
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1383.2 733 91.0
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1380.5 732 91.1
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1375.1 732 90.3
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1368.6 732 90.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1366.7 733 89.5
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1364.0 732 90.6
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1350.5 725 89.4
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1318.9 734 86.0
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 734 85.7
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 729 86.0
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 730 85.6
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 659 96.4
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 734 85.6
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1312.0 732 85.5
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 734 86.4
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 730 85.5
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 730 85.5
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 734 85.4
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1309.7 730 86.2
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1307.7 737 84.7
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 732 85.5
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1306.2 732 85.7
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1305.8 732 85.0
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 734 84.9
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 734 84.9
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1298.9 731 84.8
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1298.1 734 84.5
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 734 84.7
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 734 84.7
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1295.0 732 83.6
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 744 83.7
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1293.5 734 85.0
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1293.1 734 84.3
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1292.3 732 85.5
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1291.9 749 84.6
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 734 84.2
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 732 84.6
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1286.2 732 84.2
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1285.8 732 84.4
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1285.8 734 84.1
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1285.4 735 84.1
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1284.2 732 84.2
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1281.5 733 84.4
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1281.2 732 83.2
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1280.0 735 83.1
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1278.1 732 84.0
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1274.6 735 83.1
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1274.6 733 84.2
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1274.6 720 84.7
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 733 83.8
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 734 83.8
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 734 83.7
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1271.1 732 84.0
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 739 82.7
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 730 83.2
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 734 82.8
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 732 83.2
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 734 82.4
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 734 82.6
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 733 82.5
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1261.5 726 84.0
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1259.6 734 83.1
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1258.4 775 79.1
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1256.5 734 82.0
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1256.5 734 81.2
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1250.0 732 81.8
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1249.6 732 81.8
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1246.5 694 84.6
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1244.2 776 78.0
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1237.6 781 76.8
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1237.6 781 76.8
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1236.9 733 81.2
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1234.2 830 74.8
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 733 79.7
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 784 76.9
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1225.7 732 79.6
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1224.9 732 79.4
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1224.2 733 79.8
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 732 79.2
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1222.6 732 79.6
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1222.6 732 79.4
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1220.3 732 79.2
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1219.1 732 79.4
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1218.8 735 79.2
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1218.4 732 79.2
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1217.2 733 79.8
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1216.8 732 79.1
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1216.4 732 79.0
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1214.1 733 79.4
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1213.4 733 78.9
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1212.2 735 79.2
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1211.1 733 81.0
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1210.7 705 80.6
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1209.5 732 80.2
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1203.7 734 80.7
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1200.3 750 77.3
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1193.3 663 84.2
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1186.4 743 77.0
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1186.0 744 77.0
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1184.9 744 76.9
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1182.5 735 78.5
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1174.5 667 85.2
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1169.1 734 77.7
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1164.1 735 76.2
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1145.6 734 75.1
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1135.9 705 76.3
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1126.3 741 73.0
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1122.8 616 87.3
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1120.5 735 73.3
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1120.5 701 75.7
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1099.7 616 84.6
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1085.9 732 73.0
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1083.9 734 71.0
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 2.3e-307 1058.5 585 86.0
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 4.3e-306 1054.3 752 71.0
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 3.2e-301 1038.1 695 71.9
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.0e-286 989.9 734 65.4
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 4.7e-284 981.1 713 66.1
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 5.7e-282 974.2 733 64.7
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.2e-279 966.5 697 69.2
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 3.5e-263 911.8 656 67.8
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 2.5e-261 905.6 690 62.6
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 8.9e-259 897.1 667 64.2
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.3e-254 883.2 568 76.8
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.3e-254 882.5 508 85.6
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.3e-253 878.2 694 61.8
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.2e-234 817.0 702 57.8
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.4e-232 810.1 783 53.9
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 2.1e-223 779.6 502 75.5
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 7.6e-210 734.6 713 52.9
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.4e-208 729.6 417 82.3
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.0e-177 625.5 422 70.6
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 7.7e-154 548.5 300 89.0
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 6.5e-153 545.4 377 68.4
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.1e-147 526.2 317 81.4
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.0e-145 521.5 311 82.6
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 3.0e-142 510.0 349 77.7
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 6.8e-142 508.8 358 70.7
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.2e-124 450.7 309 70.9
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.7e-113 414.5 280 72.1
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.5e-106 390.2 312 63.5
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 8.1e-95 352.4 429 50.6
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.5e-90 337.0 209 76.6
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.0e-89 335.5 183 78.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 5.3e-86 323.2 353 55.5
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-69 268.9 221 62.9
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.2e-67 260.8 222 59.0
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.5e-64 251.1 168 67.3
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-63 248.4 203 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.7e-45 188.0 219 44.7
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.9e-43 181.8 207 52.2
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.9e-43 181.8 210 53.3
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-39 168.3 101 70.3
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 8.3e-39 166.4 101 69.3
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-29 133.7 80 70.0
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.0e-28 132.9 161 49.7
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 6.6e-28 130.2 138 49.3
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.7e-23 115.5 101 59.4
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 6.4e-23 113.6 79 64.6
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.4e-22 112.5 60 88.3
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.5e-21 107.8 160 40.6
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.3e-20 105.9 127 51.2
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.9e-20 104.4 160 40.0
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 6.2e-18 97.1 110 50.9
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.8e-17 95.5 111 47.7
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 9.8e-16 89.7 46 84.8
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 3.2e-14 84.7 266 30.5
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 3.3e-11 74.7 46 80.4
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 3.3e-11 74.7 49 77.6
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-09 68.2 75 52.0
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 4.0e-09 67.8 74 52.7
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.5e-08 65.9 40 75.0
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 3.4e-08 64.7 34 91.2
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 8.3e-07 60.1 43 76.7
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 4.1e-06 57.8 46 67.4


User provided reference genes

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