Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 2.1e-310 1068.1 535 100.0
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 2.9e-267 924.9 540 88.1
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 2.8e-217 758.8 555 71.5
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 8.6e-195 684.1 558 66.5
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 6.2e-177 624.8 610 58.4
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 2.9e-166 589.3 510 61.8
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 9.0e-160 567.8 530 59.1
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 2.7e-140 503.1 412 65.3
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 2.4e-128 463.4 604 49.2
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 1.8e-123 447.2 445 56.4
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 3.1e-112 409.8 468 48.5
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 3.7e-105 386.3 586 43.3
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 1.2e-100 371.3 639 40.1
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 6.8e-99 365.5 668 38.5
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.0e-95 354.0 630 40.2
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 3.5e-95 353.2 557 41.7
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.3e-93 346.7 468 45.1
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 3.3e-93 346.7 371 51.5
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 4.3e-93 346.3 379 52.0
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 1.2e-90 338.2 630 37.9
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 2.9e-89 333.6 534 39.9
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 8.3e-89 332.0 532 40.2
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 1.1e-88 331.6 569 41.7
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.9e-88 330.9 382 50.8
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 3.5e-87 326.6 456 43.0
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 4.6e-87 326.2 380 45.8
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 2.5e-85 320.5 590 38.1
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.5e-85 318.5 465 41.5
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.2e-84 315.8 612 37.4
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 2.3e-83 313.9 443 42.9
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.0e-83 313.2 622 36.0
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 6.8e-83 312.4 372 48.1
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 2.1e-79 300.8 353 47.6
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 4.6e-79 299.7 423 42.8
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 1.7e-78 297.7 406 43.6
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 1.9e-77 294.3 448 42.0
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 2.5e-77 293.9 358 48.0
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 3.3e-77 293.5 565 37.5
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 3.3e-77 293.5 448 42.0
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 4.3e-77 293.1 579 36.1
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 8.1e-76 288.9 456 40.1
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 3.7e-73 280.0 368 44.8
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 1.4e-72 278.1 508 37.4
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 7.8e-71 272.3 474 36.9
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 1.0e-70 271.9 429 39.4
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 1.7e-70 271.2 441 38.3
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 3.0e-70 270.4 524 36.8
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 1.6e-68 264.6 453 40.0
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 6.2e-68 262.7 295 51.2
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 1.5e-66 258.1 253 56.1
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 6.4e-65 252.7 413 40.4
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 8.4e-65 252.3 345 41.7
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.2e-63 248.4 341 41.6
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 2.1e-63 247.7 370 40.3
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 4.7e-60 236.5 246 51.6
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.5e-58 231.5 253 49.8
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 2.6e-58 230.7 288 49.0
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 7.6e-58 229.2 415 35.9
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 2.2e-57 227.6 292 44.9
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 4.9e-57 226.5 375 38.1
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 3.2e-56 223.8 270 44.8
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 4.2e-56 223.4 243 51.9
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.2e-55 221.9 412 36.7
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.5e-55 220.3 641 30.4
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 6.4e-49 199.5 239 47.3
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-47 194.9 243 46.1
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.9e-46 190.3 195 54.4
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.1e-45 188.7 225 47.6
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 1.9e-45 188.0 225 47.1
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.6e-45 186.4 305 37.7
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 1.1e-43 182.2 235 45.5
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 6.9e-43 179.5 210 46.7
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 7.6e-42 176.0 190 48.4
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.1e-39 167.9 154 58.4
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.1e-39 167.9 277 37.2
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 4.3e-37 160.2 240 39.6
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 4.3e-37 160.2 177 50.8
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 2.1e-36 157.9 269 37.5
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 3.7e-36 157.1 241 41.9
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 3.1e-35 154.1 239 39.3
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 5.5e-32 143.3 120 60.0
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.5e-31 140.6 164 50.0
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 3.5e-31 140.6 275 35.6
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 4.6e-31 140.2 195 42.6
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 4.6e-31 140.2 162 49.4
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-30 138.7 157 51.0
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 1.1e-29 135.6 170 49.4
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.3e-29 134.0 157 49.7
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.7e-29 133.3 157 49.7
Lalb_Chr05g0223961 Lupinus albus HOM05D005777 ORTHO05D006854 9.0e-27 125.9 163 50.9
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.5e-26 125.2 133 51.9
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 2.0e-26 124.8 165 46.7
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 3.4e-26 124.0 162 48.1
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 4.5e-26 123.6 219 34.2
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 5.9e-26 123.2 262 35.5
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 5.9e-26 123.2 104 56.7
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 1.0e-25 122.5 167 44.9
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 2.9e-25 120.9 162 45.1
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.8e-25 120.6 78 70.5
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-24 119.0 79 68.4
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.5e-24 116.7 133 48.9
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 3.6e-23 114.0 150 48.0
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 1.8e-22 111.7 147 47.6
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 3.9e-22 110.5 153 44.4
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 5.1e-22 110.2 225 32.9
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 1.1e-21 109.0 214 36.9
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 4.3e-21 107.1 214 37.4
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.7e-21 106.7 110 47.3
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 7.4e-21 106.3 84 60.7
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 1.3e-20 105.5 144 44.4
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 2.2e-20 104.8 70 68.6
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 4.8e-20 103.6 156 44.2
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.2e-20 102.8 100 50.0
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.9e-17 94.4 169 34.9
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.5e-17 93.2 77 61.0
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.2e-16 89.7 94 48.9
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 3.6e-15 87.4 127 43.3
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 1.8e-11 75.1 85 45.9
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 2.4e-11 74.7 85 45.9
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 2.0e-10 71.6 63 58.7
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 3.5e-10 70.9 172 30.2
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.2e-08 63.9 59 59.3
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 7.2e-08 63.2 35 77.1
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 5.2e-06 57.0 68 42.6
Eucgr.E00971 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.8e-06 56.2 50 58.0


User provided reference genes

Program Settings