Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 1.3e-168 596.3 290 100.0
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 4.3e-156 554.7 290 93.1
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 1.6e-142 509.6 290 85.9
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.0e-137 492.7 291 84.9
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 3.3e-124 448.7 291 77.3
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 1.3e-123 446.8 290 76.6
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 1.3e-123 446.8 290 76.6
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 4.0e-122 441.8 291 76.6
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 1.2e-121 440.3 298 73.5
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 2.4e-119 432.6 293 76.5
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 3.7e-115 418.7 293 73.7
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 1.5e-113 413.3 271 77.1
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 6.7e-93 344.7 254 66.5
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 8.8e-93 344.4 288 60.1
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 1.3e-91 340.5 244 68.0
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 4.1e-90 335.5 281 60.5
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 5.3e-90 335.1 258 64.7
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 9.1e-90 334.3 281 61.2
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 1.2e-89 334.0 250 66.8
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 1.2e-89 334.0 279 59.9
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 2.6e-89 332.8 247 66.8
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 5.9e-89 331.6 249 65.9
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 2.9e-88 329.3 248 62.5
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 5.0e-88 328.6 256 61.3
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.4e-87 327.0 251 67.3
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 1.6e-86 323.6 247 63.6
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 2.7e-86 322.8 272 58.8
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 4.7e-86 322.0 248 62.9
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 4.7e-86 322.0 248 61.3
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 1.4e-85 320.5 242 64.0
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 1.8e-85 320.1 227 68.3
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 8.8e-85 317.8 248 62.5
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 1.1e-84 317.4 261 61.3
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 1.5e-84 317.0 232 65.9
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 1.5e-84 317.0 250 62.0
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 2.6e-84 316.2 248 61.7
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 3.3e-84 315.8 280 57.9
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.4e-84 315.5 248 62.5
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 7.4e-84 314.7 251 59.8
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 1.7e-83 313.5 248 60.5
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 1.7e-83 313.5 242 62.8
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.2e-83 313.2 277 56.7
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 2.2e-83 313.2 248 60.9
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 2.8e-83 312.8 247 61.1
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 3.7e-83 312.4 239 63.2
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 3.7e-83 312.4 248 60.5
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.4e-82 310.5 279 56.6
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 1.4e-82 310.5 279 56.6
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 1.8e-82 310.1 246 61.0
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 2.4e-82 309.7 250 59.6
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 4.1e-82 308.9 266 57.5
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 1.6e-81 307.0 238 61.8
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 4.5e-81 305.4 279 55.9
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 1.0e-80 304.3 248 59.7
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 3.8e-80 302.4 248 58.9
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 5.0e-80 302.0 232 63.8
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 1.1e-79 300.8 224 64.3
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.1e-79 300.8 241 61.4
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 2.5e-79 299.7 232 62.1
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 7.2e-79 298.1 251 57.0
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 1.2e-78 297.4 252 57.9
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 1.2e-78 297.4 252 57.9
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 2.1e-78 296.6 248 58.5
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 3.6e-78 295.8 252 57.5
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 3.6e-78 295.8 251 57.4
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 1.4e-77 293.9 252 57.1
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 1.4e-77 293.9 252 57.1
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 2.0e-76 290.0 219 65.8
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 7.5e-76 288.1 219 65.3
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 4.8e-75 285.4 235 59.1
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 8.2e-75 284.6 235 58.7
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 1.1e-74 284.3 249 56.6
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.4e-74 283.9 219 64.4
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 5.3e-74 282.0 221 63.8
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 1.2e-73 280.8 237 62.9
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 7.7e-73 278.1 233 61.4
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 5.0e-72 275.4 231 57.1
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 1.2e-70 270.8 247 56.3
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 2.7e-70 269.6 222 61.7
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 2.7e-70 269.6 256 52.3
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 2.0e-68 263.5 279 50.5
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 3.4e-68 262.7 219 58.9
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 1.4e-66 257.3 283 48.1
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 3.1e-66 256.1 215 59.1
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 4.1e-66 255.8 215 59.1
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 7.0e-66 255.0 198 61.6
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 4.0e-61 239.2 229 49.3
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 1.8e-58 230.3 190 60.5
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 5.9e-57 225.3 165 65.5
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 5.0e-56 222.2 178 60.7
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 1.9e-55 220.3 184 57.6
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 7.3e-55 218.4 221 47.1
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 2.3e-53 213.4 248 46.8
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 3.0e-53 213.0 182 62.1
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.9e-47 193.7 181 54.1
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 2.6e-44 183.3 182 53.8
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 3.4e-44 183.0 222 40.1
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.2e-42 176.4 137 58.4
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 2.7e-41 173.3 220 40.9
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 1.0e-40 171.4 134 59.0
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.8e-38 163.3 222 38.3
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 4.0e-37 159.5 133 58.6
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 9.2e-34 148.3 113 57.5
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 3.0e-32 143.3 79 89.9
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 3.3e-31 139.8 99 64.6
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.8e-27 126.3 197 35.0
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 2.4e-26 123.6 217 30.9
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 7.1e-26 122.1 142 43.7
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.7e-24 117.5 227 29.1
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 4.6e-17 92.8 103 51.5
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 1.3e-16 91.3 201 28.9
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.9e-16 89.7 225 28.0
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 2.9e-11 73.6 115 34.8
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 3.2e-10 70.1 68 58.8
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 2.7e-09 67.0 58 58.6
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 6.0e-09 65.9 197 28.9
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 7.9e-09 65.5 217 24.4
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 2.3e-08 63.9 203 22.2
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.0e-08 63.5 196 27.0
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 5.1e-08 62.8 205 25.9
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 6.7e-08 62.4 202 24.3
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 8.7e-08 62.0 197 28.4
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 1.1e-07 61.6 226 24.8
Hma1.2p1_0797F.1_g219490 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 2.5e-07 60.5 219 23.3
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 3.3e-07 60.1 218 23.4
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 7.4e-07 58.9 197 27.4
arahy.Tifrunner.gnm1.ann1.25CQ7A Arachis hypogaea HOM05D003252 ORTHO05D003640 9.6e-07 58.5 222 23.9
arahy.Tifrunner.gnm1.ann1.B65556 Arachis hypogaea HOM05D003252 ORTHO05D003640 9.6e-07 58.5 222 23.9
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 9.6e-07 58.5 217 24.0
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 9.6e-07 58.5 194 24.2
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 1.3e-06 58.2 215 21.9
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 1.6e-06 57.8 217 24.0
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 3.7e-06 56.6 217 24.0
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 4.8e-06 56.2 260 21.5
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 6.2e-06 55.8 217 24.0
PSO210G6784 Papaver somniferum HOM05D003252 ORTHO05D003640 8.1e-06 55.5 188 25.0
Psat4g017400 Pisum sativum HOM05D003252 ORTHO05D003640 8.1e-06 55.5 196 24.0


User provided reference genes

Program Settings