Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.4e-223 779.2 377 100.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 6.3e-184 647.5 367 86.1
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 6.5e-173 610.9 339 85.8
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 4.7e-171 604.7 335 86.9
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 4.7e-171 604.7 325 86.8
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 4.7e-171 604.7 356 82.0
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 8.0e-171 604.0 317 88.6
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 3.0e-170 602.1 380 76.8
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 5.2e-170 601.3 318 88.1
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.3e-168 596.7 356 80.6
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.9e-164 582.8 315 86.3
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.3e-160 570.1 317 83.3
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 4.0e-154 548.5 316 79.7
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 6.4e-152 541.2 316 78.5
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 9.2e-151 537.3 318 78.0
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.7e-150 535.8 316 78.2
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 7.8e-150 534.3 318 78.6
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.0e-149 532.3 318 77.0
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 6.6e-149 531.2 350 73.4
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.1e-148 530.4 319 76.8
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.5e-148 530.0 316 77.2
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 2.1e-147 526.2 319 75.9
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.4e-146 523.5 316 75.9
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 2.3e-146 522.7 319 76.5
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.3e-146 522.7 319 75.9
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 8.9e-146 520.8 323 75.5
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.5e-145 520.0 316 74.7
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.0e-145 519.6 303 78.5
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.0e-145 519.6 319 75.9
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.6e-145 519.2 371 67.1
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 2.6e-145 519.2 325 74.2
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.8e-145 517.3 319 75.5
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 2.2e-144 516.2 319 76.2
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 8.3e-144 514.2 322 75.2
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.4e-143 513.5 318 74.2
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.5e-142 508.8 316 74.1
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.6e-142 508.4 317 75.1
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 4.6e-142 508.4 315 74.6
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 6.0e-142 508.1 316 73.4
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-141 507.3 316 75.9
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.3e-141 506.9 353 68.6
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.3e-141 506.9 317 74.1
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.7e-141 506.5 315 74.9
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 3.0e-141 505.8 333 71.2
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 3.0e-141 505.8 317 74.1
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 5.0e-141 505.0 317 74.1
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 5.0e-141 505.0 317 74.1
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 5.0e-141 505.0 315 74.6
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 8.6e-141 504.2 315 74.9
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.1e-140 503.8 337 70.3
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.9e-140 503.1 315 74.3
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 2.5e-140 502.7 320 74.1
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 3.3e-140 502.3 343 70.8
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.6e-140 501.5 319 71.5
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 5.6e-140 501.5 317 73.5
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.6e-139 500.0 319 74.3
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.6e-139 500.0 317 73.2
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 4.7e-139 498.4 330 69.1
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 8.1e-139 497.7 316 72.2
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.1e-138 497.3 318 71.7
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.1e-138 497.3 317 72.6
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.4e-138 496.9 316 71.2
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.5e-137 493.4 318 71.7
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.0e-137 493.0 319 70.2
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.4e-137 492.3 318 72.6
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 4.4e-137 491.9 320 70.9
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 5.8e-137 491.5 321 71.7
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 7.5e-137 491.1 315 71.1
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 9.8e-137 490.7 337 68.0
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.3e-136 490.3 316 69.9
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 1.7e-136 490.0 335 68.4
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 2.2e-136 489.6 315 71.4
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.9e-136 489.2 337 67.7
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.9e-136 489.2 315 72.1
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 2.9e-136 489.2 320 70.0
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 3.7e-136 488.8 341 67.4
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 3.7e-136 488.8 315 70.5
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.4e-136 488.0 316 70.6
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 6.4e-136 488.0 318 69.8
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 8.3e-136 487.6 316 70.3
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.1e-135 487.3 337 67.7
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.9e-135 486.5 316 72.5
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.9e-135 486.5 313 71.2
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 3.2e-135 485.7 315 71.1
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 4.1e-135 485.3 316 72.2
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.4e-135 485.0 316 71.8
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 7.1e-135 484.6 318 70.1
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.2e-134 483.8 316 70.6
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.6e-134 483.4 316 69.9
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.7e-134 482.6 368 62.5
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 6.0e-134 481.5 337 66.2
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.0e-133 480.7 322 70.2
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.5e-132 476.9 316 68.4
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.9e-132 476.5 316 70.3
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.5e-132 476.1 316 71.8
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 4.3e-132 475.3 316 69.9
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.6e-131 473.4 316 68.0
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 4.7e-131 471.9 317 68.8
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.1e-130 470.7 323 67.8
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.4e-130 470.3 313 69.3
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.1e-130 469.2 315 69.2
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 5.2e-130 468.4 319 68.0
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.4e-129 465.3 342 65.8
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 5.8e-129 464.9 317 67.8
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 9.9e-129 464.2 332 66.9
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.7e-128 462.2 319 66.8
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 8.4e-128 461.1 317 68.5
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 8.4e-128 461.1 318 66.0
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 2.4e-127 459.5 351 61.8
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 2.1e-126 456.4 318 65.4
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.1e-126 456.4 404 57.2
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 2.7e-126 456.1 390 57.7
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 2.3e-125 453.0 320 64.7
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.6e-125 451.1 315 67.9
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.2e-123 447.2 293 68.3
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.8e-122 443.4 315 65.1
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 3.1e-122 442.6 315 65.4
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.8e-121 438.3 319 66.5
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 2.2e-120 436.4 336 61.0
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.8e-115 418.7 294 66.3
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.4e-114 416.4 272 70.2
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 6.9e-114 414.8 317 62.5
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 9.0e-114 414.5 325 59.7
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.3e-112 410.6 316 61.7
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 2.2e-112 409.8 290 67.2
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 5.1e-109 398.7 284 64.4
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.1e-108 397.5 334 57.2
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 9.6e-108 394.4 322 61.5
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.5e-105 387.1 337 55.8
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.2e-103 379.0 317 59.0
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.6e-102 375.6 319 57.1
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 6.0e-102 375.2 303 61.1
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 4.3e-100 369.0 317 54.9
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 9.6e-100 367.9 322 54.7
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 6.9e-98 361.7 317 54.9
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.2e-96 356.7 292 58.6
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 4.9e-96 355.5 186 88.7
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 8.4e-96 354.8 225 71.6
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 2.5e-92 343.2 244 65.2
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 2.2e-83 313.5 355 43.7
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 3.1e-82 309.7 200 72.0
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 3.3e-76 289.7 151 88.1
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.8e-74 283.9 218 61.5
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.6e-73 280.0 181 72.4
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 5.2e-69 265.8 238 58.0
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.5e-65 253.1 165 69.7
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-63 248.1 306 48.4
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 6.5e-56 222.2 145 69.7
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.2e-53 212.6 140 70.7
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 3.0e-45 186.8 146 58.9
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 3.5e-41 173.3 317 36.9
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 5.0e-40 169.5 125 62.4
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.9e-39 167.5 96 77.1
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.6e-36 157.1 124 59.7
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 4.6e-33 146.4 109 59.6
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.9e-32 143.3 69 89.9
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 4.3e-31 139.8 93 69.9
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 3.6e-30 136.7 134 53.0
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-26 125.2 75 69.3
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.3e-24 118.2 86 65.1
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 2.5e-23 114.0 67 71.6
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 1.1e-21 108.6 73 67.1
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 4.0e-21 106.7 156 42.3
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 4.9e-19 99.8 58 72.4
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 3.2e-18 97.1 72 61.1
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 2.9e-11 73.9 43 72.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 2.4e-10 70.9 58 56.9
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.3e-08 64.3 80 45.0
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 3.0e-08 63.9 84 42.9
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-07 62.0 42 69.0
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 4.3e-07 60.1 56 55.4


User provided reference genes

Program Settings