Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G166500 Glycine max HOM05D007012 ORTHO05D008882 1.2e-62 243.0 125 100.0
Phvul.002G246900 Phaseolus vulgaris HOM05D007012 ORTHO05D008882 1.7e-56 222.6 126 90.5
Medtr8g088380 Medicago truncatula HOM05D007012 ORTHO05D008882 2.1e-51 205.7 123 83.7
TPR.G6804 Trifolium pratense HOM05D007012 ORTHO05D008882 3.6e-51 204.9 122 82.8
Lalb_Chr12g0204651 Lupinus albus HOM05D007012 ORTHO05D008882 4.7e-51 204.5 125 82.4
Psat7g066160 Pisum sativum HOM05D007012 ORTHO05D008882 4.0e-50 201.4 123 82.1
arahy.Tifrunner.gnm1.ann1.80D497 Arachis hypogaea HOM05D007012 ORTHO05D008882 5.2e-50 201.1 120 82.5
arahy.Tifrunner.gnm1.ann1.HAVC5G Arachis hypogaea HOM05D007012 ORTHO05D008882 1.2e-49 199.9 118 83.1
Lj4g0006275 Lotus japonicus HOM05D007012 ORTHO05D008882 3.7e-48 194.9 117 80.3
ClCG02G000770 Citrullus lanatus HOM05D007012 ORTHO05D008882 5.3e-47 191.0 125 72.0
Sed0027179 Sechium edule HOM05D007012 ORTHO05D008882 7.0e-47 190.7 125 72.8
MELO3C023274.2 Cucumis melo HOM05D007012 ORTHO05D008882 2.0e-46 189.1 125 71.2
Gohir.A06G207700 Gossypium hirsutum HOM05D007012 ORTHO05D008882 2.2e-45 185.7 123 73.2
Gohir.D06G213600 Gossypium hirsutum HOM05D007012 ORTHO05D008882 3.8e-45 184.9 123 72.4
Gorai.010G252500 Gossypium raimondii HOM05D007012 ORTHO05D008882 3.8e-45 184.9 123 72.4
Cc09_g08050 Coffea canephora HOM05D007012 ORTHO05D008882 8.5e-45 183.7 120 74.2
QL05p061226 Quercus lobata HOM05D007012 ORTHO05D008882 4.2e-44 181.4 121 70.2
Manes.14G122800 Manihot esculenta HOM05D007012 ORTHO05D008882 5.5e-44 181.0 121 71.1
Hma1.2p1_0333F.1_g128270 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 7.2e-44 180.6 122 70.5
TWI73G0699 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 7.2e-44 180.6 122 72.1
vmacro03442 Vaccinium macrocarpon HOM05D007012 ORTHO05D008882 9.4e-44 180.3 122 69.7
Peaxi162Scf00100g01517 Petunia axillaris HOM05D007012 ORTHO05D008882 1.2e-43 179.9 122 70.5
Thecc.06G001300 Theobroma cacao HOM05D007012 ORTHO05D008882 2.7e-43 178.7 122 69.7
CiPaw.09G115600 Carya illinoinensis HOM05D007012 ORTHO05D008882 3.6e-43 178.3 122 73.0
Dinv35474 Davidia involucrata HOM05D007012 ORTHO05D008882 4.7e-43 177.9 120 69.2
Atru.chr10.869 Acer truncatum HOM05D007012 ORTHO05D008882 6.1e-43 177.6 120 70.8
Ciclev10017190m.g Citrus clementina HOM05D007012 ORTHO05D008882 6.1e-43 177.6 123 68.3
TWI09G0010 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 6.1e-43 177.6 122 71.3
Nitab4.5_0001225g0050 Nicotiana tabacum HOM05D007012 ORTHO05D008882 5.2e-42 174.5 122 68.9
PGR031G1292 Punica granatum HOM05D007012 ORTHO05D008882 5.2e-42 174.5 125 68.8
CSS0014344 Camellia sinensis var. sinensis HOM05D007012 ORTHO05D008882 8.8e-42 173.7 122 68.0
HanXRQChr15g0468791 Helianthus annuus HOM05D007012 ORTHO05D008882 8.8e-42 173.7 120 69.2
AL5G19030 Arabidopsis lyrata HOM05D007012 ORTHO05D008882 2.0e-41 172.6 118 69.5
CANSAT11G0200 Cannabis sativa HOM05D007012 ORTHO05D008882 2.0e-41 172.6 122 70.5
Nitab4.5_0004615g0020 Nicotiana tabacum HOM05D007012 ORTHO05D008882 3.4e-41 171.8 122 68.0
GSVIVG01021626001 Vitis vinifera HOM05D007012 ORTHO05D008882 4.4e-41 171.4 122 66.4
BcaC06g33671 Brassica carinata HOM05D007012 ORTHO05D008882 5.7e-41 171.0 112 70.5
C07p38010 Brassica napus HOM05D007012 ORTHO05D008882 5.7e-41 171.0 112 70.5
BolC7t44322H Brassica oleracea HOM05D007012 ORTHO05D008882 5.7e-41 171.0 112 70.5
Carub.0005s0786 Capsella rubella HOM05D007012 ORTHO05D008882 7.5e-41 170.6 118 66.9
Lsat_1_v5_gn_1_117760 Lactuca sativa HOM05D007012 ORTHO05D008882 9.8e-41 170.2 122 67.2
Rhsim05G0222100 Rhododendron simsii HOM05D007012 ORTHO05D008882 9.8e-41 170.2 120 66.7
MD10G1253600 Malus domestica HOM05D007012 ORTHO05D008882 1.3e-40 169.9 120 68.3
Prupe.4G090000 Prunus persica HOM05D007012 ORTHO05D008882 1.7e-40 169.5 118 67.8
RcHm_v2.0_Chr5g0015911 Rosa chinensis HOM05D007012 ORTHO05D008882 1.7e-40 169.5 118 69.5
Actinidia03306 Actinidia chinensis HOM05D007012 ORTHO05D008882 2.2e-40 169.1 122 64.8
BcaC06g30880 Brassica carinata HOM05D007012 ORTHO05D008882 2.2e-40 169.1 118 66.9
CiPaw.10G085800 Carya illinoinensis HOM05D007012 ORTHO05D008882 2.2e-40 169.1 122 68.0
FvH4_3g10060 Fragaria vesca HOM05D007012 ORTHO05D008882 2.2e-40 169.1 123 65.9
Sp2g17760 Schrenkiella parvula HOM05D007012 ORTHO05D008882 3.7e-40 168.3 118 66.1
PGSC0003DMG400021126 Solanum tuberosum HOM05D007012 ORTHO05D008882 3.7e-40 168.3 122 66.4
Potri.011G098200 Populus trichocarpa HOM05D007012 ORTHO05D008882 4.8e-40 167.9 118 69.5
Solyc02g069820.3 Solanum lycopersicum HOM05D007012 ORTHO05D008882 4.8e-40 167.9 122 66.4
A06p40130 Brassica napus HOM05D007012 ORTHO05D008882 6.3e-40 167.5 112 69.6
Thhalv10005148m.g Eutrema salsugineum HOM05D007012 ORTHO05D008882 6.3e-40 167.5 118 66.1
FAN25G0029 Fragaria x ananassa HOM05D007012 ORTHO05D008882 6.3e-40 167.5 123 65.9
CAN.G1520.3 Capsicum annuum HOM05D007012 ORTHO05D008882 8.3e-40 167.2 122 68.0
VMungo0251G0322 Vigna mungo HOM05D007012 ORTHO05D008882 1.4e-39 166.4 96 88.5
Eucgr.K01942 Eucalyptus grandis HOM05D007012 ORTHO05D008882 1.8e-39 166.0 119 66.4
Sopen02g018980 Solanum pennellii HOM05D007012 ORTHO05D008882 2.4e-39 165.6 122 65.6
FAN21G1693 Fragaria x ananassa HOM05D007012 ORTHO05D008882 3.1e-39 165.2 123 65.0
ECA248G1541 Erigeron canadensis HOM05D007012 ORTHO05D008882 4.1e-39 164.9 120 69.2
Sabra11G0090900 Salix brachista HOM05D007012 ORTHO05D008882 4.1e-39 164.9 118 69.5
TAR629G2694 Trochodendron aralioides HOM05D007012 ORTHO05D008882 4.1e-39 164.9 118 65.3
MSTRG.7536 Avicennia marina HOM05D007012 ORTHO05D008882 7.0e-39 164.1 123 64.2
QL05p061674 Quercus lobata HOM05D007012 ORTHO05D008882 7.0e-39 164.1 153 54.9
Sabra11G0084700 Salix brachista HOM05D007012 ORTHO05D008882 1.2e-38 163.3 118 68.6
HPP92_000966 Vanilla planifolia HOM05D007012 ORTHO05D008882 1.6e-38 162.9 121 65.3
Aa31LG2G4090 Aethionema arabicum HOM05D007012 ORTHO05D008882 2.7e-38 162.2 118 62.7
CARHR152280 Cardamine hirsuta HOM05D007012 ORTHO05D008882 2.7e-38 162.2 118 65.3
SGA_v2.0_scaffold1G00245 Striga asiatica HOM05D007012 ORTHO05D008882 3.5e-38 161.8 123 64.2
unitig_748.g7806 Utricularia gibba HOM05D007012 ORTHO05D008882 4.5e-38 161.4 121 66.1
Migut.M01889 Erythranthe guttata HOM05D007012 ORTHO05D008882 5.9e-38 161.0 112 68.8
Migut.M00621 Erythranthe guttata HOM05D007012 ORTHO05D008882 3.8e-37 158.3 118 64.4
MD05G1273800 Malus domestica HOM05D007012 ORTHO05D008882 3.8e-37 158.3 120 65.8
THA.LOC104805486 Tarenaya hassleriana HOM05D007012 ORTHO05D008882 3.8e-37 158.3 119 63.9
Migut.M01890 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.5e-36 156.4 123 61.8
Ah.02g129420 Amaranthus hybridus HOM05D007012 ORTHO05D008882 2.5e-36 155.6 118 66.9
PSO541G1654 Papaver somniferum HOM05D007012 ORTHO05D008882 3.3e-36 155.2 125 60.0
Sc24g0001360 Simmondsia chinensis HOM05D007012 ORTHO05D008882 4.2e-36 154.8 120 60.8
PSO675G5463 Papaver somniferum HOM05D007012 ORTHO05D008882 7.2e-36 154.1 125 58.4
Sed0002894 Sechium edule HOM05D007012 ORTHO05D008882 1.6e-35 152.9 101 69.3
AUR62005835 Chenopodium quinoa HOM05D007012 ORTHO05D008882 2.3e-34 149.1 120 60.8
AUR62032828 Chenopodium quinoa HOM05D007012 ORTHO05D008882 2.3e-34 149.1 120 60.8
SalBow8G4607 Salvia bowleyana HOM05D007012 ORTHO05D008882 3.0e-34 148.7 139 54.0
EL10Ac6g13254 Beta vulgaris HOM05D007012 ORTHO05D008882 6.8e-34 147.5 116 62.9
CDE08G0050 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 2.6e-33 145.6 102 63.7
Zm00001eb218740 Zea mays HOM05D007012 ORTHO05D008882 6.3e-32 141.0 110 57.3
BraA06t26928Z Brassica rapa HOM05D007012 ORTHO05D008882 1.4e-31 139.8 167 46.1
Os03g0640400 Oryza sativa ssp. japonica HOM05D007012 ORTHO05D008882 1.8e-31 139.4 120 54.2
Hund20768 Selenicereus undatus HOM05D007012 ORTHO05D008882 1.8e-31 139.4 120 57.5
Migut.M00618 Erythranthe guttata HOM05D007012 ORTHO05D008882 4.1e-31 138.3 108 62.0
CsaV3_2G017990 Cucumis sativus L. HOM05D007012 ORTHO05D008882 2.7e-30 135.6 91 70.3
AT3G29130 Arabidopsis thaliana HOM05D007012 ORTHO05D008882 5.9e-30 134.4 85 71.8
SEGI_30962 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 6.6e-29 131.0 108 54.6
Cfa000822 Carpinus fangiana HOM05D007012 ORTHO05D008882 3.3e-28 128.6 88 70.5
Hma1.2p1_0333F.1_g128260 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 7.3e-28 127.5 87 69.0
CDE08G0396 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 8.0e-27 124.0 94 60.6
Aqoxy1G01570 Aquilegia oxysepala HOM05D007012 ORTHO05D008882 2.3e-26 122.5 100 60.0
Oeu034103.1 Olea europaea HOM05D007012 ORTHO05D008882 2.6e-25 119.0 88 68.2
Pp3c17_18250 Physcomitrium patens HOM05D007012 ORTHO05D008882 2.6e-25 119.0 123 50.4
Haze_05817 Corylus avellana HOM05D007012 ORTHO05D008882 3.4e-25 118.6 91 62.6
Mapoly0001s0437 Marchantia polymorpha HOM05D007012 ORTHO05D008882 3.4e-25 118.6 121 45.5
FAN11G2674 Fragaria x ananassa HOM05D007012 ORTHO05D008882 1.3e-24 116.7 91 61.5
CBR_g52649 Chara braunii HOM05D007012 ORTHO05D008882 2.2e-24 115.9 113 46.0
FAN16G3160 Fragaria x ananassa HOM05D007012 ORTHO05D008882 2.9e-24 115.5 91 61.5
SEGI_05812 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 1.2e-22 110.2 102 50.0
Glyma.08G124500 Glycine max HOM05D007012 ORTHO05D008882 2.7e-22 109.0 54 98.1
AagrBONN_evm.TU.Sc2ySwM_368.2441 Anthoceros agrestis HOM05D007012 ORTHO05D008882 3.5e-22 108.6 121 46.3
AagrBONN_evm.TU.Sc2ySwM_117.2140 Anthoceros agrestis HOM05D007012 ORTHO05D008882 1.0e-21 107.1 85 58.8
ATR0165G051 Amborella trichopoda HOM05D007012 ORTHO05D008882 1.1e-20 103.6 77 62.3
Migut.M00617 Erythranthe guttata HOM05D007012 ORTHO05D008882 5.2e-18 94.7 115 46.1
Nn3g20226 Nelumbo nucifera HOM05D007012 ORTHO05D008882 3.7e-08 62.0 91 38.5
QL05p061260 Quercus lobata HOM05D000041 ORTHO05D337694 4.6e-06 55.1 31 77.4


User provided reference genes

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