Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 3.3e-52 208.0 99 100.0
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 6.5e-48 193.7 100 95.0
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 7.5e-36 153.7 94 79.8
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 2.8e-35 151.8 99 74.7
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 1.2e-30 136.3 94 72.3
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.2e-27 125.6 94 66.0
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 2.9e-27 125.2 94 66.0
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 6.4e-27 124.0 83 68.7
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.1e-26 123.2 99 65.7
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.1e-26 123.2 94 61.7
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.6e-25 119.4 82 67.1
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 2.7e-25 118.6 100 65.0
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 5.9e-25 117.5 99 64.6
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.3e-24 116.3 87 64.4
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.3e-24 116.3 92 62.0
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 3.9e-24 114.8 87 66.7
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 8.6e-24 113.6 86 65.1
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.5e-23 112.1 93 58.1
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.3e-23 111.7 85 62.4
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 9.5e-23 110.2 92 58.7
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.2e-22 109.8 88 60.2
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.2e-22 107.5 87 64.4
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 8.0e-22 107.1 87 64.4
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.1e-21 106.7 82 62.2
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-21 106.7 87 64.4
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 2.3e-21 105.5 88 61.4
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.0e-21 104.8 93 59.1
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.0e-21 104.8 87 58.6
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.8e-21 104.0 86 64.0
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 8.9e-21 103.6 87 58.6
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 8.9e-21 103.6 86 61.6
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.2e-20 103.2 66 74.2
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-20 102.8 75 70.7
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.5e-20 102.8 92 58.7
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.0e-20 102.4 91 56.0
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.0e-20 102.4 81 60.5
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 2.6e-20 102.1 77 61.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 3.4e-20 101.7 89 59.6
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.7e-19 99.4 81 60.5
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 2.9e-19 98.6 78 65.4
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 3.7e-19 98.2 86 58.1
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 4.9e-19 97.8 90 56.7
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-18 95.5 81 59.3
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-18 95.5 81 59.3
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 3.2e-18 95.1 93 48.4
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 3.2e-18 95.1 95 51.6
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.4e-18 94.4 82 61.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 9.2e-18 93.6 74 59.5
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.2e-17 93.2 79 59.5
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.6e-17 92.8 84 52.4
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 2.0e-17 92.4 82 59.8
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.5e-17 91.7 75 58.7
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.6e-17 91.3 85 54.1
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 4.6e-17 91.3 95 53.7
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.6e-17 91.3 95 53.7
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 6.0e-17 90.9 85 56.5
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.8e-17 90.5 85 52.9
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.0e-16 90.1 86 51.2
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.0e-16 90.1 95 47.4
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 1.7e-16 89.4 81 51.9
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.3e-16 89.0 91 50.5
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.3e-16 89.0 86 51.2
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.0e-16 88.6 80 57.5
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 3.0e-16 88.6 85 51.8
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 3.9e-16 88.2 74 62.2
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 3.9e-16 88.2 77 59.7
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 5.0e-16 87.8 90 46.7
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 5.0e-16 87.8 90 55.6
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 6.6e-16 87.4 91 51.6
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-15 86.7 60 66.7
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.1e-15 86.7 78 50.0
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.1e-15 86.7 71 59.2
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.9e-15 85.9 80 51.2
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.9e-15 85.9 80 51.2
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.3e-15 85.1 68 58.8
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.3e-15 85.1 90 53.3
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.3e-15 85.1 90 44.4
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 4.3e-15 84.7 83 51.8
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.3e-15 84.7 90 51.1
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 4.3e-15 84.7 93 43.0
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.3e-15 84.7 90 52.2
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 4.3e-15 84.7 81 51.9
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 7.3e-15 84.0 74 51.4
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 7.3e-15 84.0 90 50.0
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 9.5e-15 83.6 75 54.7
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 9.5e-15 83.6 85 48.2
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 9.5e-15 83.6 93 43.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.5e-15 83.6 83 51.8
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 9.5e-15 83.6 96 51.0
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 1.2e-14 83.2 78 50.0
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.6e-14 82.8 82 47.6
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 1.6e-14 82.8 89 47.2
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.6e-14 82.8 83 53.0
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.8e-14 82.0 74 56.8
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 3.6e-14 81.6 82 47.6
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 4.7e-14 81.3 95 45.3
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 6.2e-14 80.9 94 48.9
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 8.1e-14 80.5 93 48.4
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 8.1e-14 80.5 79 53.2
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 8.1e-14 80.5 55 65.5
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 8.1e-14 80.5 90 52.2
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 8.1e-14 80.5 95 45.3
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.1e-13 80.1 75 48.0
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.8e-13 79.3 67 59.7
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-13 79.3 86 53.5
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.8e-13 79.3 86 53.5
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.8e-13 79.3 81 46.9
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.3e-13 79.0 78 50.0
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.1e-13 78.6 90 53.3
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 3.1e-13 78.6 89 50.6
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 4.0e-13 78.2 74 56.8
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.8e-13 77.4 83 54.2
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 8.9e-13 77.0 88 45.5
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.2e-12 76.6 74 48.6
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.5e-12 76.3 93 48.4
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.5e-12 76.3 74 50.0
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.5e-12 76.3 74 50.0
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.5e-12 76.3 74 50.0
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.5e-12 76.3 92 46.7
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-12 76.3 86 52.3
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.5e-12 76.3 50 68.0
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.0e-12 75.9 83 43.4
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 2.0e-12 75.9 85 43.5
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 3.4e-12 75.1 70 55.7
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 4.4e-12 74.7 88 47.7
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 5.8e-12 74.3 79 50.6
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 5.8e-12 74.3 74 54.1
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 7.5e-12 73.9 79 45.6
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.3e-11 73.2 96 38.5
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 2.2e-11 72.4 68 51.5
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 2.2e-11 72.4 62 64.5
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.9e-11 72.0 63 54.0
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.9e-11 72.0 91 42.9
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 8.3e-11 70.5 91 42.9
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 1.9e-10 69.3 57 56.1
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.4e-10 68.9 81 48.1
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.2e-10 68.6 48 68.8
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 7.1e-10 67.4 62 61.3
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.7e-09 65.5 62 59.7
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 6.0e-09 64.3 54 59.3
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.0e-09 64.3 77 48.1
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 6.0e-09 64.3 46 65.2
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.0e-08 63.5 50 60.0
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 8.6e-08 60.5 46 60.9
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.3e-07 58.5 60 46.7
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.3e-07 58.2 38 71.1
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 7.3e-07 57.4 42 64.3
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 7.3e-07 57.4 54 51.9
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 2.1e-06 55.8 41 65.9


User provided reference genes

Program Settings