Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 2.7e-189 665.2 354 100.0
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 6.1e-181 637.5 352 96.3
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 3.4e-155 552.0 353 84.1
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 7.5e-155 550.8 356 82.6
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 3.5e-152 542.0 360 83.3
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.7e-151 539.7 356 81.5
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.6e-144 516.5 386 74.1
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 2.7e-144 515.8 356 78.9
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 9.9e-139 497.3 314 85.4
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.7e-138 496.5 315 84.1
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 3.0e-135 485.7 328 79.6
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 5.8e-123 444.9 352 68.2
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 1.9e-121 439.9 352 67.6
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.4e-121 439.5 335 70.7
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 1.2e-120 437.2 350 67.4
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 2.1e-120 436.4 350 68.6
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 6.0e-120 434.9 297 81.8
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 1.8e-119 433.3 337 68.5
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 2.5e-118 429.5 354 66.7
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.6e-117 426.8 352 65.9
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 8.1e-117 424.5 339 66.7
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.3e-116 421.8 350 66.0
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 5.3e-116 421.8 350 66.0
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 5.3e-116 421.8 351 65.2
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 1.5e-115 420.2 352 65.9
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.0e-115 419.9 342 65.5
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 2.6e-115 419.5 338 66.3
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.6e-115 419.5 334 67.4
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 3.4e-115 419.1 342 65.2
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 4.5e-115 418.7 334 67.4
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.7e-114 416.8 333 67.3
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.4e-114 414.8 347 65.1
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.9e-113 413.3 336 64.9
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.1e-112 409.8 336 66.4
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 2.1e-112 409.8 373 62.2
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 2.1e-112 409.8 362 63.5
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 2.7e-112 409.5 352 65.3
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 2.7e-112 409.5 356 61.2
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 2.7e-112 409.5 333 65.5
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 2.7e-112 409.5 340 65.9
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.0e-112 408.3 363 62.5
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 6.0e-112 408.3 353 62.9
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.0e-111 406.0 350 64.6
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 5.1e-111 405.2 351 63.5
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 5.1e-111 405.2 338 63.6
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 5.1e-111 405.2 355 62.3
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 8.7e-111 404.4 367 62.1
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.6e-109 400.2 380 60.3
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 1.6e-109 400.2 348 62.6
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 8.2e-109 397.9 339 63.1
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.4e-108 397.1 357 61.1
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 7.6e-107 391.3 340 62.1
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 2.9e-106 389.4 297 70.7
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 4.9e-106 388.7 335 62.1
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 3.2e-105 386.0 352 59.9
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 7.1e-105 384.8 338 60.7
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 1.6e-104 383.6 338 60.4
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 2.1e-104 383.3 349 58.5
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 6.0e-104 381.7 334 62.0
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-103 380.2 350 60.9
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 6.7e-103 378.3 346 58.1
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 8.7e-103 377.9 336 59.8
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 1.1e-102 377.5 380 56.8
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.5e-102 377.1 412 52.2
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.9e-102 376.7 334 60.8
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-101 373.2 444 50.5
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 3.7e-101 372.5 353 58.9
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 6.9e-100 368.2 350 58.3
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.2e-99 367.5 356 57.3
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.2e-99 367.5 352 58.2
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 2.0e-99 366.7 337 59.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 7.6e-99 364.8 353 56.4
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.3e-98 364.0 343 57.7
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.7e-98 363.6 356 57.6
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 5.0e-98 362.1 349 58.5
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 6.5e-98 361.7 349 58.5
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 2.5e-97 359.8 353 56.4
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 4.2e-97 359.0 339 56.9
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 2.7e-96 356.3 335 59.1
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 2.7e-96 356.3 352 56.0
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 4.6e-96 355.5 348 56.6
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 1.0e-95 354.4 335 58.5
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.4e-95 354.0 565 43.0
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-94 350.9 326 60.1
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.9e-94 350.1 329 59.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 4.3e-94 349.0 375 54.1
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.3e-94 349.0 320 60.9
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 5.7e-94 348.6 378 53.4
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 9.7e-94 347.8 358 55.0
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.7e-94 347.8 320 61.2
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 1.7e-93 347.1 360 54.4
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 2.2e-93 346.7 293 65.2
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 2.2e-93 346.7 278 66.9
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.2e-93 346.7 313 61.3
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 2.8e-93 346.3 454 47.8
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.7e-93 345.9 347 57.3
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 4.8e-93 345.5 335 57.6
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 8.2e-93 344.7 335 57.3
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.4e-92 344.0 336 56.2
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.4e-92 344.0 316 60.1
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 3.1e-92 342.8 305 62.0
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.3e-92 342.0 313 61.0
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 6.5e-90 335.1 348 56.6
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 2.1e-88 330.1 329 57.8
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.3e-82 310.8 259 63.3
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 1.3e-82 310.8 294 58.5
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.7e-82 310.5 294 58.2
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.7e-82 310.5 406 50.0
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 5.0e-82 308.9 329 55.9
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 5.5e-81 305.4 332 53.6
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.3e-79 300.1 224 70.5
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 3.0e-79 299.7 271 61.3
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 7.0e-76 288.5 348 47.1
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 3.8e-74 282.7 305 57.0
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 5.0e-74 282.3 299 52.8
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 9.4e-73 278.1 304 51.6
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.2e-72 277.7 164 89.6
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 3.0e-71 273.1 294 54.8
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.3e-69 267.7 353 45.0
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.6e-67 260.8 259 56.8
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.4e-65 251.5 351 45.0
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.7e-64 250.0 351 44.2
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 3.1e-60 236.5 225 56.9
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 2.8e-56 223.4 164 72.0
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 5.7e-54 215.7 332 43.7
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 7.8e-51 205.3 155 69.0
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.3e-50 204.5 213 55.4
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 1.6e-48 197.6 140 79.3
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 5.8e-46 189.1 208 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 2.2e-45 187.2 320 38.8
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 4.9e-45 186.0 171 58.5
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 8.3e-45 185.3 224 50.0
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 9.2e-44 181.8 378 34.1
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.2e-43 181.4 127 74.0
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 6.0e-43 179.1 174 55.7
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.5e-41 174.5 327 36.1
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.7e-37 161.0 301 37.2
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 1.9e-36 157.5 113 73.5
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.9e-36 157.5 113 73.5
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.5e-33 147.1 112 70.5
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.2e-29 134.0 224 41.1
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 2.4e-28 130.6 104 65.4
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 1.6e-27 127.9 270 36.7
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 9.5e-25 118.6 111 61.3
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-23 114.0 152 44.1
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.4e-23 114.0 129 50.4
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 5.4e-20 102.8 106 50.9
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 2.5e-17 94.0 86 55.8
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 5.3e-15 86.3 150 39.3
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.5e-14 84.7 124 37.1
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 2.1e-08 64.3 50 64.0
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 6.2e-08 62.8 237 26.2
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 1.2e-06 58.5 85 43.5


User provided reference genes

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