Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 2.3e-265 918.3 458 100.0
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 1.4e-254 882.5 458 95.4
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 2.3e-244 848.6 458 90.8
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 6.8e-241 837.0 458 89.7
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 8.9e-241 836.6 457 90.6
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 5.0e-236 820.8 458 88.4
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 3.3e-235 818.1 459 88.5
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.6e-226 789.3 458 84.5
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.8e-218 761.9 461 81.6
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.8e-217 759.2 455 82.0
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 2.2e-215 752.3 454 80.6
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 5.4e-214 747.7 456 80.9
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.2e-213 746.5 458 79.3
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 6.0e-213 744.2 458 79.3
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 5.1e-212 741.1 456 79.8
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 1.3e-210 736.5 458 78.2
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 1.1e-209 733.4 452 78.5
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 4.0e-209 731.5 467 76.9
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 5.3e-209 731.1 457 79.0
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 9.0e-209 730.3 438 80.8
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 2.0e-208 729.2 458 77.9
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 7.6e-208 727.2 444 79.1
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 7.6e-208 727.2 458 77.7
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 9.9e-208 726.9 452 77.0
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 1.3e-207 726.5 454 77.3
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 2.9e-207 725.3 455 76.7
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 3.8e-207 724.9 456 77.4
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 6.4e-207 724.2 456 77.0
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.4e-206 723.0 453 77.7
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 1.9e-206 722.6 449 77.7
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 2.4e-206 722.2 441 78.9
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 1.2e-205 719.9 452 75.7
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 2.1e-205 719.2 450 75.6
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 4.6e-205 718.0 445 77.8
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.0e-204 716.8 455 76.3
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.8e-204 716.1 452 75.7
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 2.3e-204 715.7 457 77.7
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 2.3e-204 715.7 441 79.4
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 3.0e-204 715.3 456 78.1
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 3.9e-204 714.9 452 76.1
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 3.9e-204 714.9 458 74.5
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.1e-203 713.4 438 76.9
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 4.3e-203 711.4 452 77.2
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 2.8e-202 708.8 417 81.5
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 2.8e-202 708.8 477 74.6
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 2.8e-202 708.8 457 76.8
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 3.6e-202 708.4 435 77.9
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 3.6e-202 708.4 454 76.7
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 3.6e-202 708.4 456 76.1
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 8.1e-202 707.2 453 75.3
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 1.4e-201 706.4 458 77.5
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.8e-201 706.1 450 76.4
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.4e-201 705.7 430 77.9
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 3.1e-201 705.3 435 77.7
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 6.9e-201 704.1 458 75.5
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 9.0e-201 703.7 456 74.6
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 1.5e-200 703.0 459 75.4
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.5e-200 703.0 435 77.7
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 4.5e-200 701.4 459 73.6
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 4.5e-200 701.4 489 70.8
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 7.6e-200 700.7 471 71.5
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 9.9e-200 700.3 452 73.9
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 9.9e-200 700.3 458 74.5
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.3e-199 699.9 439 75.2
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 2.9e-199 698.7 434 76.7
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 3.8e-199 698.4 452 73.5
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 6.4e-199 697.6 452 75.4
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 8.4e-199 697.2 463 72.8
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 3.2e-198 695.3 452 73.2
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 6.0e-197 691.0 452 73.2
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 7.9e-197 690.6 435 77.9
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 3.0e-196 688.7 452 73.2
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 2.5e-195 685.6 474 69.8
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 3.3e-195 685.3 472 70.1
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 5.6e-195 684.5 481 69.2
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 8.1e-194 680.6 459 70.4
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 1.1e-193 680.2 452 73.7
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 1.1e-193 680.2 456 72.1
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 3.1e-193 678.7 456 71.7
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 5.3e-193 677.9 445 73.5
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 1.2e-192 676.8 452 70.6
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 5.8e-192 674.5 448 72.1
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 5.8e-192 674.5 453 74.4
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 7.6e-192 674.1 456 71.7
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 2.1e-189 666.0 452 71.2
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 3.9e-188 661.8 458 73.4
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 2.1e-186 656.0 484 69.6
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 3.7e-186 655.2 460 68.0
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 2.6e-184 649.0 456 70.6
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 2.6e-184 649.0 417 74.8
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.3e-183 646.7 504 67.5
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 3.2e-182 642.1 452 69.7
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.2e-181 640.2 467 69.2
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 8.7e-180 634.0 416 72.8
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 1.9e-179 632.9 487 64.9
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 2.5e-179 632.5 411 76.4
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 6.5e-175 617.8 409 73.6
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.9e-174 616.3 463 66.7
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.6e-173 613.2 388 73.7
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 8.2e-170 600.9 471 65.4
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 9.1e-169 597.4 452 66.4
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 2.2e-167 592.8 362 78.2
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.9e-166 589.7 452 65.3
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 1.8e-161 573.2 426 63.8
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 3.6e-157 558.9 451 59.6
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 4.4e-155 552.0 431 59.9
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 7.7e-152 541.2 436 59.4
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.1e-150 537.3 429 60.1
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 9.4e-150 534.3 322 79.8
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 8.8e-148 527.7 279 90.7
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 7.5e-139 498.0 458 59.4
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.2e-120 437.6 452 54.9
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 6.4e-114 415.2 434 46.3
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 2.5e-110 403.3 427 49.4
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 5.8e-99 365.5 315 60.6
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 3.8e-98 362.8 367 55.0
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 4.2e-89 332.8 484 38.6
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 9.0e-84 315.1 182 80.2
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 5.6e-78 295.8 189 79.9
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 2.7e-56 223.8 347 39.8
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 1.4e-52 211.5 372 38.7
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.8e-52 211.1 108 86.1
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 7.0e-44 182.6 124 75.0
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 1.9e-41 174.5 403 32.8
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 4.2e-41 173.3 127 72.4
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 4.5e-35 153.3 137 57.7
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 5.7e-30 136.3 106 63.2
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 7.5e-30 136.0 85 68.2
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 1.8e-23 114.8 120 47.5
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 1.3e-21 108.6 67 70.1
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 3.7e-21 107.1 189 32.3
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 6.3e-21 106.3 53 81.1
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 1.2e-19 102.1 126 46.8
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 3.5e-19 100.5 76 63.2
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 1.3e-18 98.6 66 71.2
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 4.3e-17 93.6 106 54.7
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 4.3e-17 93.6 70 61.4
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 1.5e-14 85.1 56 76.8


User provided reference genes

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