Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 3.8e-190 667.9 319 100.0
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 2.9e-174 615.1 321 91.9
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 2.5e-165 585.5 315 88.6
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 3.7e-161 571.6 321 83.2
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 7.0e-160 567.4 319 82.1
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 3.6e-156 555.1 321 80.7
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 9.8e-154 547.0 321 80.1
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 8.3e-153 543.9 321 80.1
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 1.4e-147 526.6 319 78.4
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 1.7e-145 519.6 319 77.1
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 5.2e-131 471.5 315 70.5
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 4.6e-127 458.4 314 66.2
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 1.3e-126 456.8 311 68.5
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 2.3e-126 456.1 291 74.6
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 5.1e-126 454.9 320 66.9
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 1.9e-125 453.0 314 68.2
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 4.3e-125 451.8 328 65.5
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 1.8e-123 446.4 297 69.4
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 4.0e-123 445.3 297 68.7
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 5.2e-123 444.9 320 65.6
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 4.4e-122 441.8 297 68.7
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 4.9e-121 438.3 302 66.9
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 4.9e-121 438.3 297 67.7
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 4.9e-121 438.3 297 67.7
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 1.1e-120 437.2 296 67.2
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 1.9e-120 436.4 309 65.4
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 5.4e-120 434.9 309 65.7
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 9.3e-120 434.1 308 65.3
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 1.2e-119 433.7 297 67.7
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 4.6e-119 431.8 294 66.7
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 1.0e-118 430.6 351 60.1
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 3.0e-118 429.1 305 65.6
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 3.9e-118 428.7 297 67.3
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 1.9e-117 426.4 313 63.3
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 5.6e-117 424.9 302 64.6
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 9.6e-117 424.1 293 67.2
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 1.3e-116 423.7 314 62.4
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 6.2e-116 421.4 305 64.6
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 6.2e-116 421.4 303 65.0
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 1.1e-115 420.6 293 65.2
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 1.1e-115 420.6 305 64.3
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 2.4e-115 419.5 317 59.6
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 3.1e-115 419.1 296 65.5
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 9.0e-115 417.5 303 64.0
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 1.5e-114 416.8 297 64.3
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 4.4e-114 415.2 293 64.5
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 5.8e-114 414.8 310 61.9
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 7.6e-114 414.5 304 63.5
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 1.7e-113 413.3 293 64.5
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 2.9e-113 412.5 303 63.7
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 3.8e-113 412.1 306 63.1
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 3.8e-113 412.1 301 64.8
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 1.4e-112 410.2 296 63.5
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 2.4e-112 409.5 295 64.1
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 9.3e-112 407.5 330 59.4
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 7.9e-111 404.4 301 62.8
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 1.3e-110 403.7 311 61.1
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 1.3e-110 403.7 309 61.2
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 5.1e-110 401.7 287 65.2
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 6.6e-110 401.4 323 59.1
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 1.1e-109 400.6 291 62.9
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 7.3e-109 397.9 288 64.6
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 1.3e-108 397.1 287 63.4
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 6.2e-108 394.8 299 62.5
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 8.1e-108 394.4 243 77.4
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 1.1e-107 394.0 294 59.9
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.4e-107 393.7 296 61.1
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 2.4e-107 392.9 296 60.1
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 3.1e-107 392.5 296 61.5
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 3.1e-107 392.5 293 63.1
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 5.3e-107 391.7 292 63.0
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 6.9e-107 391.3 296 59.8
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.2e-106 390.6 296 60.8
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 3.4e-106 389.0 296 60.1
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 4.5e-106 388.7 296 58.8
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 4.5e-106 388.7 296 58.8
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 5.8e-106 388.3 306 57.8
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 7.6e-106 387.9 295 60.3
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 7.6e-106 387.9 299 60.5
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 4.9e-105 385.2 259 69.1
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 4.9e-105 385.2 335 55.5
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 1.1e-104 384.0 325 57.5
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 1.9e-104 383.3 296 58.1
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 2.4e-104 382.9 410 49.3
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 4.2e-104 382.1 295 60.3
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 1.6e-103 380.2 296 57.8
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 6.0e-103 378.3 295 61.0
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 3.3e-101 372.5 285 61.4
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 5.6e-101 371.7 285 58.6
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 2.8e-100 369.4 291 57.7
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 6.2e-100 368.2 454 45.6
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 5.3e-99 365.2 295 59.7
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 6.9e-99 364.8 295 59.3
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 2.1e-95 353.2 297 56.6
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 2.7e-95 352.8 295 57.3
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 1.6e-92 343.6 177 88.7
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 3.4e-90 335.9 310 52.3
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 3.4e-90 335.9 305 53.4
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 1.1e-88 330.9 312 51.0
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 2.7e-87 326.2 298 52.7
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 5.5e-80 302.0 311 48.6
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 4.1e-75 285.8 302 45.7
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 3.3e-69 266.2 295 44.7
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 5.5e-64 248.8 138 87.0
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.0e-61 240.4 307 42.3
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 8.0e-55 218.4 150 67.3
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.4e-51 206.8 256 40.2
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 4.4e-37 159.5 132 56.8
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 1.0e-33 148.3 87 69.0
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 1.0e-09 68.6 70 52.9


User provided reference genes

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