Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.2e-261 906.0 448 100.0
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 3.3e-224 781.6 447 87.0
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 6.3e-207 724.2 448 80.1
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 8.8e-201 703.7 460 77.6
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 3.1e-198 695.3 448 77.9
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 7.7e-197 690.6 485 74.2
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.3e-196 689.9 468 74.4
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.1e-195 686.8 399 83.7
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 5.2e-185 651.4 516 67.2
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 7.5e-184 647.5 490 68.8
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 2.7e-181 639.0 393 76.6
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 3.3e-179 632.1 446 69.5
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 7.2e-179 630.9 411 75.2
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 2.3e-177 625.9 415 72.5
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.6e-176 622.5 397 74.1
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.3e-175 620.2 414 72.2
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.2e-175 619.4 394 74.4
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 6.3e-175 617.8 394 74.9
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 1.4e-174 616.7 419 71.1
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.6e-173 613.2 425 70.6
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 5.9e-173 611.3 411 70.6
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 5.9e-173 611.3 413 71.4
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 1.3e-172 610.1 391 73.9
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 4.3e-171 605.1 394 73.9
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.2e-170 603.6 405 70.9
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 4.7e-170 601.7 390 72.8
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 6.1e-170 601.3 401 71.3
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.0e-169 600.5 392 72.7
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 8.9e-169 597.4 391 73.1
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.2e-168 597.0 399 69.7
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.6e-168 595.9 394 72.3
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 3.4e-168 595.5 417 70.0
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 4.4e-168 595.1 407 69.5
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.7e-167 593.2 422 69.2
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 1.7e-167 593.2 426 68.5
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 2.2e-167 592.8 413 69.5
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 8.3e-167 590.9 392 72.4
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 8.3e-167 590.9 397 71.8
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.1e-166 590.5 394 70.8
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 3.2e-166 589.0 397 69.5
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 3.2e-166 589.0 413 68.8
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 3.2e-166 589.0 396 71.5
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 5.4e-166 588.2 400 70.2
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 7.0e-166 587.8 453 65.6
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.2e-165 587.0 400 70.0
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 6.0e-165 584.7 406 68.5
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 2.3e-164 582.8 400 69.8
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.1e-163 580.5 421 65.8
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 1.1e-163 580.5 397 71.8
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 2.5e-163 579.3 425 65.9
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 3.3e-163 578.9 456 67.1
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 4.3e-163 578.6 421 66.7
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 4.3e-163 578.6 391 70.8
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 4.3e-163 578.6 395 68.9
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 5.6e-163 578.2 395 69.6
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 7.3e-163 577.8 396 70.5
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 5.2e-161 571.6 419 65.9
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 6.4e-159 564.7 413 65.4
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 9.2e-158 560.8 395 68.6
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.7e-157 559.3 408 65.4
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.0e-156 557.4 408 65.2
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 8.6e-156 554.3 392 66.8
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 3.3e-155 552.4 398 66.8
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 3.3e-155 552.4 396 67.7
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 4.3e-155 552.0 376 69.9
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 7.3e-155 551.2 429 63.2
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 7.3e-155 551.2 414 64.0
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.2e-154 550.4 395 67.3
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 2.1e-154 549.7 423 64.3
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 3.1e-153 545.8 396 66.7
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 3.1e-153 545.8 392 66.1
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 4.0e-153 545.4 395 67.3
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.2e-152 543.9 379 70.7
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.4e-152 542.3 405 64.9
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.7e-151 540.0 413 63.9
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 6.4e-151 538.1 395 65.8
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 8.3e-151 537.7 439 60.8
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 8.3e-151 537.7 396 65.9
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 1.1e-150 537.3 393 66.9
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 1.2e-149 533.9 395 66.3
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 1.2e-149 533.9 395 66.3
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 6.6e-148 528.1 395 64.8
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.1e-147 527.3 413 63.2
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 6.4e-143 511.5 391 65.0
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 5.4e-142 508.4 328 71.6
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.3e-140 503.8 396 62.9
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 4.0e-137 492.3 377 64.7
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 2.1e-130 469.9 330 66.4
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.2e-128 464.2 329 65.0
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 3.8e-127 459.1 303 70.6
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 6.4e-127 458.4 329 67.2
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 2.7e-125 453.0 409 56.5
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 6.0e-125 451.8 328 66.5
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.4e-121 440.7 388 54.4
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 1.2e-120 437.6 447 55.9
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.9e-118 430.3 279 72.0
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.2e-117 427.6 386 54.7
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.6e-117 427.2 323 65.3
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 7.9e-109 398.3 327 60.2
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 4.8e-106 389.0 354 56.2
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.1e-105 387.9 358 53.9
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.4e-105 386.7 414 49.0
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 2.4e-105 386.7 284 66.2
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 7.2e-102 375.2 213 82.2
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 1.2e-101 374.4 303 60.4
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.6e-101 374.0 284 63.7
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.6e-93 346.3 241 67.2
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.5e-88 330.9 251 64.1
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 8.5e-87 325.1 237 66.2
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 6.7e-84 315.5 491 39.7
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 5.7e-75 285.8 347 45.2
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.3e-74 284.6 188 70.7
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 6.8e-68 262.3 148 87.8
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 8.0e-61 238.8 190 65.3
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 2.8e-53 213.8 175 61.1
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 6.8e-52 209.1 243 46.5
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 5.8e-51 206.1 400 35.5
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 7.5e-51 205.7 159 64.8
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.7e-50 204.5 154 61.7
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.4e-49 200.7 168 58.3
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.5e-38 164.1 154 55.2
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 5.6e-38 162.9 441 29.0
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.6e-37 161.4 433 29.6
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.1e-33 148.7 442 28.7
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.4e-33 148.3 439 27.1
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.9e-33 147.9 415 28.2
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 8.9e-28 129.0 81 72.8
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 5.8e-27 126.3 87 66.7
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 8.4e-26 122.5 73 74.0
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.9e-25 121.3 235 35.7
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 7.1e-25 119.4 107 52.3
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.3e-21 108.6 84 66.7
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 2.8e-21 107.5 91 62.6
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 8.1e-21 105.9 266 29.7
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 1.3e-15 88.6 66 68.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 1.1e-14 85.5 72 58.3
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 5.6e-14 83.2 63 65.1
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 2.3e-07 61.2 37 75.7


User provided reference genes

Program Settings