Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G062801 Glycine max HOM05D002756 ORTHO05D002896 4.8e-110 401.4 232 100.0
Glyma.17G144800 Glycine max HOM05D002756 ORTHO05D002896 4.9e-78 295.0 234 78.6
Glyma.19G105000 Glycine max HOM05D002756 ORTHO05D002896 1.7e-75 286.6 192 88.5
Glyma.01G122700 Glycine max HOM05D002756 ORTHO05D002896 4.9e-70 268.5 232 73.3
Phvul.003G223300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 1.5e-55 220.3 237 67.1
VMungo0251G0835 Vigna mungo HOM05D002756 ORTHO05D002896 2.4e-53 213.0 238 66.0
Lj4g0006676 Lotus japonicus HOM05D002756 ORTHO05D002896 2.4e-37 159.8 283 49.5
Lalb_Chr05g0221081 Lupinus albus HOM05D002756 ORTHO05D002896 5.5e-21 105.5 290 40.7
arahy.Tifrunner.gnm1.ann1.X9KLSS Arachis hypogaea HOM05D002756 ORTHO05D002896 1.2e-20 104.4 257 47.1
Cfa012698 Carpinus fangiana HOM05D002756 ORTHO05D002896 6.7e-19 98.6 206 45.6
arahy.Tifrunner.gnm1.ann1.73EWJC Arachis hypogaea HOM05D002756 ORTHO05D002896 2.4e-16 90.1 238 42.9
Ciclev10019703m.g Citrus clementina HOM05D002756 ORTHO05D002896 1.2e-15 87.8 252 40.1
Haze_07935 Corylus avellana HOM05D002756 ORTHO05D002896 3.4e-15 86.3 203 41.9
arahy.Tifrunner.gnm1.ann1.X0SKZJ Arachis hypogaea HOM05D002756 ORTHO05D002896 5.9e-15 85.5 235 41.7
arahy.Tifrunner.gnm1.ann1.4S09TY Arachis hypogaea HOM05D002756 ORTHO05D002896 7.7e-15 85.1 286 41.3
Psat4g073480 Pisum sativum HOM05D002756 ORTHO05D002896 2.2e-14 83.6 235 42.1
Medtr4g100530 Medicago truncatula HOM05D002756 ORTHO05D002896 2.9e-14 83.2 201 41.3
Lalb_Chr16g0386581 Lupinus albus HOM05D002756 ORTHO05D002896 3.8e-14 82.8 216 37.5
CANSAT21G1520 Cannabis sativa HOM05D002756 ORTHO05D002896 7.2e-13 78.6 221 37.6
Ca_21993_v3 Cicer arietinum L. HOM05D002756 ORTHO05D002896 9.4e-13 78.2 243 39.9
CiPaw.12G049400 Carya illinoinensis HOM05D002756 ORTHO05D002896 2.1e-12 77.0 285 36.1
CiPaw.11G082800 Carya illinoinensis HOM05D002756 ORTHO05D002896 3.6e-12 76.3 259 37.5
TWI81G0105 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 6.1e-12 75.5 236 38.1
Manes.02G041900 Manihot esculenta HOM05D002756 ORTHO05D002896 3.0e-11 73.2 298 34.6
TPR.G37630 Trifolium pratense HOM05D002756 ORTHO05D002896 3.0e-11 73.2 234 40.2
Hma1.2p1_1196F.1_g266030 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 1.5e-10 70.9 221 39.4
Hma1.2p1_1335F.1_g276370 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 1.5e-10 70.9 221 39.4
Lalb_Chr09g0329931 Lupinus albus HOM05D002756 ORTHO05D002896 3.3e-10 69.7 241 32.8
Sabra03G0049800 Salix brachista HOM05D002756 ORTHO05D002896 2.8e-09 66.6 288 34.4
Prupe.5G064100 Prunus persica HOM05D002756 ORTHO05D002896 3.7e-09 66.2 328 32.0
Sc07g0009180 Simmondsia chinensis HOM05D002756 ORTHO05D002896 4.8e-09 65.9 91 51.6
Ah.12g054420 Amaranthus hybridus HOM05D002756 ORTHO05D002896 6.3e-09 65.5 40 85.0
Sopen08g026790 Solanum pennellii HOM05D002756 ORTHO05D002896 6.3e-09 65.5 249 37.3
RcHm_v2.0_Chr7g0204301 Rosa chinensis HOM05D002756 ORTHO05D002896 1.1e-08 64.7 104 50.0
FAN08G2407 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.4e-08 64.3 100 49.0
Nitab4.5_0002601g0020 Nicotiana tabacum HOM05D002756 ORTHO05D002896 1.4e-08 64.3 264 35.6
PGR042G1682 Punica granatum HOM05D002756 ORTHO05D002896 1.8e-08 63.9 261 34.1
FvH4_5g19610 Fragaria vesca HOM05D002756 ORTHO05D002896 2.4e-08 63.5 104 49.0
FAN04G0448 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.4e-08 63.5 104 49.0
FAN18G1828 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.4e-08 63.5 104 49.0
Nitab4.5_0007283g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 2.4e-08 63.5 267 34.8
Solyc08g078290.1 Solanum lycopersicum HOM05D002756 ORTHO05D002896 3.1e-08 63.2 227 36.6
MELO3C013922.2 Cucumis melo HOM05D002756 ORTHO05D002896 4.1e-08 62.8 45 75.6
FAN13G0091 Fragaria x ananassa HOM05D002756 ORTHO05D002896 4.1e-08 62.8 104 48.1
THA.LOC104807911 Tarenaya hassleriana HOM05D002756 ORTHO05D002896 4.1e-08 62.8 81 50.6
Cpa.g.sc89.63 Carica papaya HOM05D002756 ORTHO05D002896 5.3e-08 62.4 232 34.9
Dinv39178 Davidia involucrata HOM05D002756 ORTHO05D002896 7.0e-08 62.0 210 39.5
TAR629G0742 Trochodendron aralioides HOM05D002756 ORTHO05D002896 7.0e-08 62.0 291 33.7
Gohir.A03G006140 Gossypium hirsutum HOM05D002756 ORTHO05D002896 1.2e-07 61.2 80 53.8
QL12p010923 Quercus lobata HOM05D002756 ORTHO05D002896 1.5e-07 60.8 140 37.1
QL12p011144 Quercus lobata HOM05D002756 ORTHO05D002896 1.5e-07 60.8 140 37.1
TAR629G2869 Trochodendron aralioides HOM05D002756 ORTHO05D002896 1.5e-07 60.8 277 33.6
DCAR_008518 Daucus carota HOM05D002756 ORTHO05D002896 2.0e-07 60.5 225 35.1
Migut.A01149 Erythranthe guttata HOM05D002756 ORTHO05D002896 2.0e-07 60.5 68 52.9
PGSC0003DMG400026237 Solanum tuberosum HOM05D002756 ORTHO05D002896 2.0e-07 60.5 259 34.7
GSVIVG01005822001 Vitis vinifera HOM05D002756 ORTHO05D002896 2.0e-07 60.5 70 57.1
AUR62007124 Chenopodium quinoa HOM05D002756 ORTHO05D002896 2.6e-07 60.1 273 31.9
ClCG10G002500 Citrullus lanatus HOM05D002756 ORTHO05D002896 2.6e-07 60.1 294 32.3
HanXRQChr17g0549241 Helianthus annuus HOM05D002756 ORTHO05D002896 2.6e-07 60.1 69 55.1
Aa31LG2G12970 Aethionema arabicum HOM05D002756 ORTHO05D002896 3.4e-07 59.7 43 79.1
CsaV3_3G002530 Cucumis sativus L. HOM05D002756 ORTHO05D002896 3.4e-07 59.7 301 34.2
MD04G1061300 Malus domestica HOM05D002756 ORTHO05D002896 3.4e-07 59.7 145 36.6
vmacro00014 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 3.4e-07 59.7 38 84.2
Atru.chr9.1260 Acer truncatum HOM05D002756 ORTHO05D002896 5.9e-07 58.9 157 34.4
Gorai.003G175700 Gossypium raimondii HOM05D002756 ORTHO05D002896 7.7e-07 58.5 80 51.2
Lj8C270T8 Lonicera japonica HOM05D002756 ORTHO05D002896 7.7e-07 58.5 49 71.4
Peaxi162Scf00346g00062 Petunia axillaris HOM05D002756 ORTHO05D002896 7.7e-07 58.5 42 81.0
Rhsim11G0050900 Rhododendron simsii HOM05D002756 ORTHO05D002896 7.7e-07 58.5 48 75.0
Gohir.D03G166200 Gossypium hirsutum HOM05D002756 ORTHO05D002896 1.0e-06 58.2 80 51.2
PSO732G0525 Papaver somniferum HOM05D002756 ORTHO05D002896 1.0e-06 58.2 280 30.0
AL7G37860 Arabidopsis lyrata HOM05D002756 ORTHO05D002896 1.3e-06 57.8 50 68.0
MD06G1054900 Malus domestica HOM05D002756 ORTHO05D002896 1.3e-06 57.8 151 39.1
Eucgr.E00399 Eucalyptus grandis HOM05D002756 ORTHO05D002896 1.7e-06 57.4 89 48.3
CSS0004447 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 2.2e-06 57.0 277 34.7
Gorai.008G233100 Gossypium raimondii HOM05D002756 ORTHO05D002896 2.2e-06 57.0 86 41.9
SGA_v2.0_scaffold199G41225 Striga asiatica HOM05D002756 ORTHO05D002896 2.2e-06 57.0 65 53.8
Cc08_g12030 Coffea canephora HOM05D002756 ORTHO05D002896 2.9e-06 56.6 271 35.1
Gohir.A12G214900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 2.9e-06 56.6 86 44.2
Peaxi162Scf00190g00123 Petunia axillaris HOM05D002756 ORTHO05D002896 2.9e-06 56.6 85 45.9
Sed0017596 Sechium edule HOM05D002756 ORTHO05D002896 2.9e-06 56.6 282 33.7
BcaC09g50418 Brassica carinata HOM05D002756 ORTHO05D002896 3.8e-06 56.2 39 82.1
BcaNung00149 Brassica carinata HOM05D002756 ORTHO05D002896 3.8e-06 56.2 39 82.1
C01p25660 Brassica napus HOM05D002756 ORTHO05D002896 3.8e-06 56.2 39 82.1
BolC1t02520H Brassica oleracea HOM05D002756 ORTHO05D002896 3.8e-06 56.2 39 82.1
Duzib068G0659 Durio zibethinus HOM05D002756 ORTHO05D002896 3.8e-06 56.2 254 32.7
Gorai.003G175800 Gossypium raimondii HOM05D002756 ORTHO05D002896 3.8e-06 56.2 73 50.7
AT4G16790 Arabidopsis thaliana HOM05D002756 ORTHO05D002896 5.0e-06 55.8 127 39.4
ECA246G2565 Erigeron canadensis HOM05D002756 ORTHO05D002896 5.0e-06 55.8 31 90.3
Thhalv10024963m.g Eutrema salsugineum HOM05D002756 ORTHO05D002896 5.0e-06 55.8 39 82.1
BcaB04g18397 Brassica carinata HOM05D002756 ORTHO05D002896 6.5e-06 55.5 39 82.1
BcaC07g38020 Brassica carinata HOM05D002756 ORTHO05D002896 6.5e-06 55.5 39 82.1
A08p12710 Brassica napus HOM05D002756 ORTHO05D002896 6.5e-06 55.5 39 82.1
BolC8t48410H Brassica oleracea HOM05D002756 ORTHO05D002896 6.5e-06 55.5 39 82.1
BraA08t33260Z Brassica rapa HOM05D002756 ORTHO05D002896 6.5e-06 55.5 39 82.1
CAN.G62.18 Capsicum annuum HOM05D002756 ORTHO05D002896 6.5e-06 55.5 246 34.6
CARHR223410 Cardamine hirsuta HOM05D002756 ORTHO05D002896 6.5e-06 55.5 42 71.4
Duzib084G0904 Durio zibethinus HOM05D002756 ORTHO05D002896 6.5e-06 55.5 247 32.4
Gohir.A03G006260 Gossypium hirsutum HOM05D002756 ORTHO05D002896 8.5e-06 55.1 68 52.9


User provided reference genes

Program Settings