Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 1.5e-22 109.0 70 100.0
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 3.7e-21 104.4 70 97.1
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 3.7e-21 104.4 70 97.1
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 4.2e-17 90.9 70 88.6
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 5.5e-17 90.5 70 80.0
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 3.6e-16 87.8 70 71.4
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 3.6e-16 87.8 70 85.7
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 8.0e-16 86.7 68 69.1
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 1.8e-15 85.5 68 88.2
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 1.8e-15 85.5 70 85.7
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 4.4e-14 80.9 68 67.6
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 5.7e-14 80.5 70 77.1
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 7.4e-14 80.1 70 84.3
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 7.4e-14 80.1 73 65.8
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 6.3e-13 77.0 67 77.6
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 1.1e-12 76.3 72 62.5
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 1.8e-12 75.5 72 59.7
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 2.4e-12 75.1 75 57.3
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 2.4e-12 75.1 75 57.3
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 2.4e-12 75.1 75 57.3
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 4.1e-12 74.3 68 57.4
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 4.1e-12 74.3 68 69.1
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 5.3e-12 73.9 63 71.4
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 7.0e-12 73.6 67 62.7
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 1.6e-11 72.4 74 60.8
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.0e-11 72.0 68 60.3
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 2.0e-11 72.0 68 60.3
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 2.0e-11 72.0 68 60.3
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 3.5e-11 71.2 70 57.1
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 4.5e-11 70.9 78 62.8
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 7.7e-11 70.1 68 60.3
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.0e-10 69.7 67 73.1
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 1.7e-10 68.9 63 63.5
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 1.7e-10 68.9 64 59.4
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 1.7e-10 68.9 71 71.8
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 2.2e-10 68.6 69 55.1
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 2.2e-10 68.6 71 57.7
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.9e-10 68.2 39 87.2
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 5.0e-10 67.4 67 59.7
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 5.0e-10 67.4 67 53.7
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 5.0e-10 67.4 67 53.7
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 8.5e-10 66.6 39 84.6
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 1.9e-09 65.5 39 82.1
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 1.9e-09 65.5 74 67.6
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 2.5e-09 65.1 67 58.2
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 2.5e-09 65.1 67 70.1
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 3.2e-09 64.7 73 54.8
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 3.2e-09 64.7 70 55.7
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 9.4e-09 63.2 38 81.6
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 9.4e-09 63.2 39 79.5
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 1.2e-08 62.8 39 79.5
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 1.2e-08 62.8 70 50.0
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 1.6e-08 62.4 70 57.1
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.1e-08 62.0 63 55.6
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 4.7e-08 60.8 73 69.9
Lj1g0020512 Lotus japonicus HOM05D007996 ORTHO05D009821 4.7e-08 60.8 69 56.5
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 1.4e-07 59.3 64 56.2
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 1.4e-07 59.3 63 54.0
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 1.8e-07 58.9 63 57.1
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 2.3e-07 58.5 38 78.9
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 3.0e-07 58.2 67 67.2
MBI11_g42682_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 4.0e-07 57.8 40 70.0
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 5.2e-07 57.4 68 69.1
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 5.2e-07 57.4 68 69.1
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 5.2e-07 57.4 61 57.4
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 5.2e-07 57.4 52 55.8
Migut.I00487 Erythranthe guttata HOM05D007996 ORTHO05D009821 6.7e-07 57.0 37 70.3
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 6.7e-07 57.0 67 65.7
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 8.8e-07 56.6 37 75.7
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 8.8e-07 56.6 78 46.2
TAR629G0997 Trochodendron aralioides HOM05D007996 ORTHO05D009821 1.2e-06 56.2 68 60.3
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 2.6e-06 55.1 66 50.0
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 4.4e-06 54.3 66 47.0
Nn4g22432 Nelumbo nucifera HOM05D007996 ORTHO05D009821 5.7e-06 53.9 75 46.7
unitig_22.g6269 Utricularia gibba HOM05D007996 ORTHO05D009821 7.5e-06 53.5 66 45.5


User provided reference genes

Program Settings