Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 1.4e-78 296.2 145 100.0
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 2.8e-63 245.4 150 86.7
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 3.3e-56 221.9 145 80.0
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 6.9e-46 187.6 142 71.1
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 1.1e-43 180.3 136 68.4
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 1.4e-43 179.9 120 77.5
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 4.2e-43 178.3 140 67.1
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 9.3e-43 177.2 147 70.7
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 2.3e-41 172.6 144 66.0
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 5.6e-40 167.9 127 68.5
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 1.1e-38 163.7 145 57.2
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 3.2e-35 152.1 143 55.9
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 2.1e-34 149.4 143 55.2
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 3.5e-34 148.7 143 55.2
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 4.6e-34 148.3 143 55.2
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 6.0e-34 147.9 141 56.7
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 1.0e-33 147.1 147 51.7
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 1.3e-33 146.7 143 56.6
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 2.3e-33 146.0 148 54.7
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 3.0e-33 145.6 139 59.0
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 5.1e-33 144.8 143 53.8
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 5.1e-33 144.8 134 58.2
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 8.7e-33 144.1 141 56.0
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 8.7e-33 144.1 134 57.5
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 1.1e-32 143.7 140 55.0
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 1.9e-32 142.9 134 57.5
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 3.3e-32 142.1 140 57.1
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 4.3e-32 141.7 138 54.3
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 1.3e-31 140.2 136 55.1
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 2.1e-31 139.4 137 52.6
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 2.8e-31 139.0 139 55.4
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 2.8e-31 139.0 126 58.7
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 8.1e-31 137.5 137 53.3
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 8.1e-31 137.5 155 50.3
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 8.1e-31 137.5 145 51.7
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 1.1e-30 137.1 137 56.9
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.1e-30 137.1 145 51.7
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 3.1e-30 135.6 124 57.3
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 4.0e-30 135.2 145 51.0
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 4.0e-30 135.2 149 51.0
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 5.3e-30 134.8 124 58.1
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 6.9e-30 134.4 138 55.8
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 9.0e-30 134.0 138 57.2
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 1.5e-29 133.3 139 53.2
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 2.0e-29 132.9 144 50.7
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 2.6e-29 132.5 147 53.1
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 3.4e-29 132.1 147 53.1
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 3.4e-29 132.1 131 54.2
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 4.5e-29 131.7 142 54.9
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 7.6e-29 131.0 139 54.0
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 7.6e-29 131.0 145 49.0
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 7.6e-29 131.0 141 51.8
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 1.7e-28 129.8 129 55.8
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 2.4e-27 125.9 135 50.4
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 2.4e-27 125.9 136 50.0
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 3.2e-27 125.6 150 47.3
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 5.5e-27 124.8 137 51.1
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 5.5e-27 124.8 148 48.0
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 7.1e-27 124.4 125 54.4
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 2.1e-26 122.9 149 45.0
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 2.7e-26 122.5 134 51.5
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 3.5e-26 122.1 135 50.4
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 4.6e-26 121.7 136 47.1
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 6.0e-26 121.3 149 44.3
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 6.0e-26 121.3 145 49.7
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 1.8e-25 119.8 147 49.0
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.8e-25 119.8 137 48.2
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 3.9e-25 118.6 132 49.2
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 3.9e-25 118.6 127 51.2
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 6.7e-25 117.9 114 55.3
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 1.5e-24 116.7 139 48.2
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 1.9e-24 116.3 105 56.2
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 3.3e-24 115.5 137 47.4
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 4.3e-24 115.2 135 51.1
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 9.6e-24 114.0 123 51.2
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 6.2e-23 111.3 121 49.6
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 5.3e-22 108.2 111 53.2
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 1.5e-21 106.7 140 46.4
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 5.8e-21 104.8 104 46.2
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 1.7e-20 103.2 151 45.0
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.7e-20 103.2 121 45.5
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 2.9e-20 102.4 140 43.6
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 4.9e-20 101.7 105 54.3
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 2.5e-19 99.4 121 47.1
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 5.5e-19 98.2 150 45.3
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 5.5e-19 98.2 150 45.3
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.6e-18 96.7 143 45.5
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 4.6e-18 95.1 116 45.7
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.0e-17 94.0 123 48.0
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 1.3e-17 93.6 124 44.4
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 6.7e-17 91.3 125 44.8
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 1.1e-16 90.5 125 43.2
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 1.5e-16 90.1 136 41.9
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 1.9e-16 89.7 80 55.0
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 2.5e-16 89.4 124 44.4
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 2.5e-16 89.4 124 44.4
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 2.5e-16 89.4 124 44.4
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 3.3e-16 89.0 124 45.2
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 3.3e-16 89.0 124 44.4
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 7.4e-16 87.8 127 42.5
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 4.8e-15 85.1 77 54.5
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 1.2e-13 80.5 124 40.3
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 2.0e-13 79.7 124 39.5
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 2.0e-13 79.7 148 39.2
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 7.7e-13 77.8 124 38.7
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 7.7e-13 77.8 124 41.1
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 1.7e-12 76.6 81 50.6
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 1.7e-12 76.6 94 43.6
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 2.5e-11 72.8 164 33.5
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 1.1e-06 57.4 132 33.3
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 5.3e-06 55.1 90 41.1
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 6.9e-06 54.7 88 40.9


User provided reference genes

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