Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 2896.7 1575 100.0
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 2605.5 1578 88.2
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 0.0e+00 2293.8 1623 81.2
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 0.0e+00 2263.0 1623 77.5
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 0.0e+00 2007.6 1587 70.3
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1894.8 1593 67.3
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 0.0e+00 1885.2 1586 67.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1772.3 1579 65.2
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1766.5 1599 64.4
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1549.3 1591 58.3
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1464.9 1590 56.9
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1367.1 1589 54.2
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1349.7 1597 53.7
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1283.1 1588 54.8
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1235.7 1609 52.1
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1231.1 1609 52.1
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1180.2 1593 50.5
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1176.8 1655 47.5
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1150.6 1612 47.7
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1139.0 1584 49.7
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1134.4 1686 46.4
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1122.5 1593 47.8
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1100.1 1617 47.5
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 4.2e-306 1055.4 1687 44.2
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 2.1e-305 1053.1 1618 47.1
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 4.1e-301 1038.9 1609 45.5
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 6.5e-299 1031.6 1614 46.1
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 8.5e-299 1031.2 1607 46.0
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 6.1e-297 1025.0 1609 45.5
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 9.7e-295 1017.7 1605 45.2
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 4.8e-294 1015.4 1609 45.3
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 6.3e-294 1015.0 1609 45.4
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 5.0e-291 1005.4 1615 44.8
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 6.5e-291 1005.0 1599 45.2
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.8e-285 986.9 1605 44.4
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.1e-281 973.4 1600 44.1
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 8.8e-280 968.0 1588 43.6
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.6e-273 947.2 1618 43.6
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.8e-272 943.7 766 72.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 4.0e-272 942.6 1610 42.1
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.3e-271 939.5 1615 43.2
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 7.0e-269 931.8 1601 42.6
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 7.7e-268 928.3 1614 41.9
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.8e-264 917.1 1653 41.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.5e-263 914.1 1617 42.2
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 8.3e-262 908.3 1516 42.7
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 1.8e-261 907.1 1648 42.1
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.2e-260 904.4 1633 42.0
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 5.9e-260 902.1 1412 45.4
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.5e-258 897.5 1610 42.4
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.9e-258 897.1 1662 41.0
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.2e-254 883.6 1616 42.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.1e-253 879.4 1601 41.6
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.0e-253 878.6 1616 41.5
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 2.5e-250 870.2 1605 41.2
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.1e-249 865.5 1644 40.9
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 2.3e-235 820.5 1604 40.1
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.5e-234 817.8 1608 39.7
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 7.3e-234 815.5 1598 40.2
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.8e-232 810.8 1381 42.4
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 2.3e-232 810.4 1557 40.4
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 9.9e-231 805.1 1595 40.6
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 8.6e-227 792.0 1599 38.8
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 8.6e-227 792.0 1610 41.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.5e-226 790.4 1619 38.5
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.6e-225 787.7 1612 39.5
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 4.4e-223 779.6 1606 39.3
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 7.1e-221 772.3 1611 38.7
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.3e-219 767.3 1632 38.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 2.8e-217 760.4 1593 39.1
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 9.3e-213 745.3 1667 37.9
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 7.8e-212 742.3 1603 38.0
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 7.3e-210 735.7 1602 39.6
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.4e-205 721.5 1620 40.6
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 3.7e-201 706.8 1664 36.2
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 9.9e-199 698.7 1627 38.1
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 4.3e-194 683.3 1592 36.6
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 5.6e-194 682.9 1640 37.8
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.4e-194 682.6 1600 35.8
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.9e-189 667.9 1589 36.4
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.5e-186 658.3 1587 36.7
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.2e-180 638.6 1305 37.8
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.7e-177 628.2 1639 36.0
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 6.3e-177 626.3 1639 36.0
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.6e-175 620.9 1624 34.9
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 3.4e-175 620.5 1654 35.7
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.9e-175 619.8 1202 39.1
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.1e-172 611.3 1739 34.7
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.7e-172 610.1 1606 35.1
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 9.1e-160 569.3 1349 36.7
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 7.7e-159 566.2 1644 34.4
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 2.0e-154 551.6 1602 33.2
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 1.1e-152 545.8 1606 32.6
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.4e-152 545.4 1719 34.1
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 5.0e-150 537.0 1612 33.1
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 2.5e-149 534.6 1726 33.5
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 4.8e-145 520.4 1603 33.3
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 8.3e-145 519.6 1606 33.3
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 3.5e-143 514.2 1603 32.3
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 1.0e-142 512.7 1597 32.0
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 5.0e-142 510.4 1192 36.7
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.8e-140 504.6 1620 32.2
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 8.0e-140 503.1 1198 38.3
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.5e-138 498.8 1644 31.9
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 1.6e-132 478.8 1619 31.9
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.6e-132 478.8 1620 31.9
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.5e-130 472.2 1611 32.0
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 2.0e-130 471.9 1610 32.0
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 5.2e-123 447.2 1594 31.4
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 4.9e-121 440.7 1615 30.5
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.2e-120 438.0 927 37.8
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.1e-117 429.5 1612 30.6
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.2e-116 426.0 1620 30.9
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 5.2e-115 420.6 1590 31.9
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.2e-114 419.5 1475 32.0
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 2.9e-113 414.8 1673 31.6
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 8.3e-113 413.3 1609 30.5
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 2.1e-111 408.7 709 42.0
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.1e-109 402.9 1584 29.1
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 1.2e-108 399.4 1469 31.7
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 3.0e-102 378.3 1599 29.6
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.1e-99 369.8 1586 28.2
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.9e-96 359.0 1576 27.7
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.9e-89 335.1 700 39.9
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 9.0e-75 287.0 336 51.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.7e-69 267.7 473 41.4
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 8.5e-57 227.3 1550 28.0
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.5e-53 216.5 1655 26.6
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 2.2e-52 212.6 212 62.3
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.5e-50 206.5 224 58.5
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 3.5e-50 205.3 1452 24.8
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-48 200.3 478 37.4
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.1e-45 190.3 193 58.5
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 2.6e-45 189.1 198 60.1
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.6e-42 179.9 207 52.7
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.6e-42 179.1 673 30.2
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.9e-41 175.6 1285 26.6
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.4e-38 166.8 1535 25.8
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.5e-37 163.3 1292 26.3
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 3.4e-37 162.2 1506 25.6
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 3.7e-36 158.7 203 48.3
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.1e-35 157.1 1556 25.6
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.5e-34 152.1 374 36.4
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 2.5e-32 146.0 194 54.6
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.8e-28 131.7 89 78.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 6.3e-28 131.3 210 44.3
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.1e-23 116.3 556 29.5
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.8e-19 103.2 174 42.0
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.9e-16 93.2 129 48.1
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.3e-16 92.4 137 43.1
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.1e-15 89.7 72 72.2
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 2.3e-14 86.3 73 67.1
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.4e-13 82.0 143 42.7
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 5.4e-11 75.1 495 32.5
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.5e-08 67.0 230 31.3
Psat7g104280 Pisum sativum HOM05D001630 ORTHO05D002505 2.5e-08 66.2 105 42.9
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 4.0e-06 58.9 840 27.6


User provided reference genes

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