Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 3.1e-40 167.9 81 100.0
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 3.2e-37 157.9 84 94.0
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 8.0e-36 153.3 81 91.4
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 7.3e-29 130.2 82 79.3
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.7e-25 119.0 83 73.5
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.6e-23 112.5 83 71.1
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 5.9e-23 110.5 85 68.2
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 3.9e-22 107.8 85 67.1
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.1e-21 106.3 79 70.9
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 5.6e-21 104.0 79 68.4
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.6e-20 102.4 79 63.3
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 2.8e-20 101.7 86 64.0
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.8e-20 101.7 72 69.4
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 4.7e-20 100.9 87 64.4
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 6.2e-20 100.5 84 65.5
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.4e-19 99.4 79 64.6
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 2.3e-19 98.6 83 60.2
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 3.1e-19 98.2 82 59.8
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 4.0e-19 97.8 84 59.5
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.5e-18 95.9 85 62.4
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 4.4e-18 94.4 79 62.0
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 7.5e-18 93.6 75 61.3
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 9.8e-18 93.2 79 58.2
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 9.8e-18 93.2 79 58.2
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.3e-17 92.8 79 58.2
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.9e-17 91.7 83 57.8
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 3.7e-17 91.3 88 58.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.7e-17 91.3 75 65.3
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.9e-17 90.9 79 57.0
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 4.9e-17 90.9 79 58.2
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 8.3e-17 90.1 75 58.7
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.1e-16 89.7 74 64.9
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.4e-16 88.6 75 54.7
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 3.2e-16 88.2 79 58.2
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.2e-16 88.2 83 57.8
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 5.4e-16 87.4 79 59.5
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.2e-15 86.3 78 59.0
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.6e-15 85.9 78 55.1
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.6e-15 85.9 76 52.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.7e-15 85.1 79 54.4
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 2.7e-15 85.1 83 57.8
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 3.5e-15 84.7 74 59.5
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 4.6e-15 84.3 82 54.9
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 4.6e-15 84.3 79 55.7
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 4.6e-15 84.3 77 55.8
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.0e-15 84.0 80 55.0
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 6.0e-15 84.0 80 55.0
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 7.8e-15 83.6 82 54.9
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 1.0e-14 83.2 79 54.4
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.3e-14 82.8 77 55.8
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.3e-14 82.8 80 55.0
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.3e-14 82.8 74 60.8
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.7e-14 82.4 82 57.3
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.7e-14 82.4 89 52.8
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.7e-14 82.4 93 53.8
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 2.3e-14 82.0 74 56.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 3.0e-14 81.6 85 50.6
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 3.0e-14 81.6 85 50.6
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.0e-14 81.6 91 52.7
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.9e-14 81.3 85 51.8
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.9e-14 81.3 85 51.8
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.0e-14 80.9 80 53.8
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 6.6e-14 80.5 85 50.6
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 6.6e-14 80.5 80 53.8
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 6.6e-14 80.5 78 53.8
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 8.6e-14 80.1 86 47.7
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 8.6e-14 80.1 75 56.0
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 8.6e-14 80.1 79 53.2
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.1e-13 79.7 78 51.3
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.5e-13 79.3 75 52.0
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.5e-13 79.3 80 52.5
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.5e-13 79.3 72 52.8
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.5e-13 79.3 72 52.8
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 1.5e-13 79.3 77 54.5
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.9e-13 79.0 72 52.8
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.5e-13 78.6 84 47.6
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 2.5e-13 78.6 74 55.4
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 2.5e-13 78.6 84 48.8
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 2.5e-13 78.6 74 55.4
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.5e-13 78.6 91 52.7
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 3.3e-13 78.2 89 52.8
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.3e-13 77.8 79 54.4
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 4.3e-13 77.8 77 50.6
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 7.3e-13 77.0 88 48.9
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.3e-13 77.0 90 52.2
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 7.3e-13 77.0 88 47.7
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.2e-12 76.3 80 50.0
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.2e-12 76.3 76 53.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 1.2e-12 76.3 76 50.0
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.6e-12 75.9 82 51.2
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 2.1e-12 75.5 86 45.3
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.1e-12 75.5 75 54.7
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.7e-12 74.3 75 54.7
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 8.1e-12 73.6 68 55.9
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 8.1e-12 73.6 74 50.0
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 8.1e-12 73.6 79 53.2
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.4e-11 72.8 75 56.0
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.8e-11 72.4 77 50.6
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.8e-11 72.4 74 55.4
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.8e-11 72.4 92 51.1
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 1.8e-11 72.4 75 54.7
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 1.8e-11 72.4 86 48.8
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 4.0e-11 71.2 68 54.4
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 4.0e-11 71.2 87 48.3
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 4.0e-11 71.2 81 48.1
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 4.0e-11 71.2 84 54.8
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.0e-11 71.2 71 49.3
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 8.9e-11 70.1 76 52.6
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.2e-10 69.7 76 55.3
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 1.5e-10 69.3 85 44.7
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 1.5e-10 69.3 85 44.7
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 1.5e-10 69.3 85 44.7
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 1.5e-10 69.3 85 44.7
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 2.0e-10 68.9 91 45.1
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 2.6e-10 68.6 75 50.7
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 2.6e-10 68.6 83 45.8
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 2.6e-10 68.6 83 45.8
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.6e-10 68.6 75 46.7
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 4.4e-10 67.8 73 50.7
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 4.4e-10 67.8 73 49.3
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 5.8e-10 67.4 84 45.2
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 5.8e-10 67.4 74 48.6
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 5.8e-10 67.4 73 49.3
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 7.5e-10 67.0 90 45.6
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 7.5e-10 67.0 74 50.0
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.5e-10 67.0 76 53.9
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 9.9e-10 66.6 83 44.6
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 9.9e-10 66.6 73 52.1
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.3e-09 66.2 75 50.7
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.3e-09 66.2 75 50.7
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.3e-09 66.2 82 48.8
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.7e-09 65.9 75 46.7
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.7e-09 65.9 81 51.9
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.9e-09 65.1 78 43.6
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 4.9e-09 64.3 90 43.3
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 4.9e-09 64.3 78 46.2
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 6.4e-09 63.9 84 46.4
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 8.3e-09 63.5 78 43.6
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.1e-08 63.2 83 48.2
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.1e-08 63.2 72 50.0
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.4e-08 62.8 83 45.8
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 1.4e-08 62.8 71 47.9
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 3.2e-08 61.6 71 47.9
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 3.2e-08 61.6 76 50.0
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 4.1e-08 61.2 77 42.9
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.4e-08 60.8 75 49.3
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 7.1e-08 60.5 77 41.6
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 7.1e-08 60.5 77 41.6
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 7.1e-08 60.5 88 45.5
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 9.2e-08 60.1 75 46.7
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 1.2e-07 59.7 72 44.4
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.2e-07 59.7 67 47.8
ClCG06G016690 Citrullus lanatus HOM05D003533 ORTHO05D004009 1.6e-07 59.3 59 55.9
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.1e-07 58.9 74 41.9
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 3.5e-07 58.2 69 44.9
Glyma.14G206400 Glycine max HOM05D003533 ORTHO05D004009 3.5e-07 58.2 56 57.1
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 6.0e-07 57.4 72 41.7
Lsat_1_v5_gn_1_11180 Lactuca sativa HOM05D003533 ORTHO05D004009 6.0e-07 57.4 72 48.6
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 7.8e-07 57.0 68 47.1
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 7.8e-07 57.0 75 45.3
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 1.7e-06 55.8 73 42.5
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.7e-06 55.8 77 42.9
Sabra12G0053900 Salix brachista HOM05D003533 ORTHO05D004009 1.7e-06 55.8 74 43.2
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.7e-06 55.8 53 52.8
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.3e-06 55.5 69 42.0
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.0e-06 55.1 59 54.2
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 3.9e-06 54.7 58 51.7
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 3.9e-06 54.7 83 41.0
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 3.9e-06 54.7 68 47.1


User provided reference genes

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