Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G024700 Glycine max HOM05D008369 ORTHO05D005932 4.9e-73 277.7 141 100.0
Phvul.003G188100 Phaseolus vulgaris HOM05D008369 ORTHO05D005932 3.1e-43 178.7 150 64.0
Glyma.17G102500 Glycine max HOM05D008369 ORTHO05D005932 1.2e-42 176.8 130 73.8
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 8.7e-38 160.6 150 59.3
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 6.5e-25 117.9 156 51.3
Lj4g0010683 Lotus japonicus HOM05D008369 ORTHO05D005932 5.5e-24 114.8 151 48.3
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 3.9e-22 108.6 167 43.7
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 4.1e-19 98.6 166 45.2
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 6.5e-17 91.3 170 41.8
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 1.8e-14 83.2 162 38.9
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 2.0e-13 79.7 162 37.0
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 1.3e-12 77.0 178 36.0
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 6.3e-12 74.7 156 37.8
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 2.4e-11 72.8 161 31.1
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 4.1e-11 72.0 167 34.1
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 7.0e-11 71.2 178 33.7
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 2.6e-10 69.3 155 33.5
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 7.7e-10 67.8 168 28.6
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 1.0e-09 67.4 184 29.9
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 2.2e-09 66.2 149 34.2
MBI16_g25840_MAGBIO Magnolia biondii HOM05D036885 ORTHO05D034247 5.0e-09 65.1 152 28.9
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 5.0e-09 65.1 142 33.8
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.1e-08 63.9 151 31.1
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 1.1e-08 63.9 135 34.1
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.5e-08 63.5 151 31.8
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 2.5e-08 62.8 164 32.9
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 2.5e-08 62.8 175 29.7
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 3.2e-08 62.4 149 30.2
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 3.2e-08 62.4 149 31.5
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 5.5e-08 61.6 158 32.9
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 9.4e-08 60.8 162 32.1
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 1.6e-07 60.1 164 29.3
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 2.1e-07 59.7 133 32.3
Sc12g0006540 Simmondsia chinensis HOM05D008369 ORTHO05D005932 2.7e-07 59.3 148 29.7
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.8e-06 56.6 148 29.7
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 2.3e-06 56.2 192 26.0
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 2.3e-06 56.2 147 30.6
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 3.0e-06 55.8 164 28.7
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 6.7e-06 54.7 148 35.1
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 8.8e-06 54.3 164 29.9


User provided reference genes

Program Settings