Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 1.4e-105 386.3 198 100.0
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 2.8e-98 362.1 198 93.9
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 7.1e-86 320.9 201 81.1
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 2.7e-85 318.9 215 78.6
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 9.0e-81 303.9 199 78.9
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 4.4e-80 301.6 203 75.9
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 7.1e-78 294.3 203 74.9
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 2.3e-76 289.3 283 60.4
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 7.6e-72 274.2 200 72.0
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 4.2e-70 268.5 202 70.3
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 9.3e-70 267.3 201 70.1
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 1.0e-68 263.8 200 69.5
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 1.8e-68 263.1 197 65.5
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 1.5e-67 260.0 206 66.5
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 1.5e-67 260.0 206 66.5
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 2.5e-67 259.2 208 66.3
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 5.6e-67 258.1 202 66.8
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 5.6e-67 258.1 206 66.0
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 9.6e-67 257.3 199 67.3
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 1.3e-66 256.9 206 66.0
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 1.6e-66 256.5 206 65.0
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 2.8e-66 255.8 197 66.0
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 4.8e-66 255.0 206 63.6
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 2.4e-65 252.7 199 65.3
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 3.1e-65 252.3 197 61.9
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 5.3e-65 251.5 207 64.3
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 5.3e-65 251.5 203 65.0
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 6.9e-65 251.1 201 64.2
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 9.0e-65 250.8 205 62.9
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 2.0e-64 249.6 202 62.4
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 2.6e-64 249.2 205 62.4
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 3.4e-64 248.8 207 64.3
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 4.5e-64 248.4 207 62.3
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 4.5e-64 248.4 203 62.6
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 5.8e-64 248.1 201 63.2
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 1.7e-63 246.5 202 60.9
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 2.9e-63 245.7 202 60.4
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 2.9e-63 245.7 203 61.1
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 2.9e-63 245.7 205 62.0
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 6.5e-63 244.6 205 65.9
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 8.4e-63 244.2 214 59.3
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 8.4e-63 244.2 201 64.2
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 1.9e-62 243.0 211 60.2
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 7.1e-62 241.1 204 61.3
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 2.7e-61 239.2 215 57.2
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 7.9e-61 237.7 193 63.2
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 7.9e-61 237.7 205 59.0
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 1.3e-60 236.9 202 60.9
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 1.3e-60 236.9 202 64.9
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 1.3e-60 236.9 203 59.6
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 3.0e-60 235.7 198 60.1
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 3.9e-60 235.3 210 59.0
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 6.7e-60 234.6 199 60.3
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 8.7e-60 234.2 204 59.8
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 2.5e-59 232.6 202 61.4
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 2.5e-59 232.6 193 60.1
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 5.7e-59 231.5 204 57.4
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 1.6e-58 229.9 205 56.6
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 2.1e-58 229.6 238 53.8
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 8.2e-58 227.6 207 56.5
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.4e-57 226.9 198 58.1
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 2.4e-57 226.1 168 68.5
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 3.4e-56 222.2 199 61.3
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 7.6e-56 221.1 177 65.0
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 1.3e-55 220.3 193 59.1
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 1.7e-55 219.9 177 64.4
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 3.8e-55 218.8 196 61.7
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 3.2e-54 215.7 189 59.3
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 4.2e-54 215.3 215 54.4
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 5.5e-54 214.9 172 69.8
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 9.3e-54 214.2 196 56.1
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 3.5e-53 212.2 168 65.5
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 4.6e-53 211.8 195 57.4
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 7.9e-53 211.1 173 65.3
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 7.9e-53 211.1 182 61.5
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 1.0e-52 210.7 175 67.4
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 2.3e-52 209.5 167 64.7
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 6.7e-52 208.0 167 63.5
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 6.7e-52 208.0 208 52.9
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 7.4e-51 204.5 207 53.1
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 9.7e-51 204.1 214 55.6
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 1.6e-50 203.4 210 53.3
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 1.6e-50 203.4 186 55.9
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 8.2e-50 201.1 170 60.6
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 1.5e-48 196.8 220 50.0
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 3.4e-48 195.7 211 53.1
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 4.5e-48 195.3 211 52.6
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 5.9e-48 194.9 195 52.8
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 1.3e-47 193.7 212 50.9
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 1.3e-47 193.7 203 49.3
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 5.0e-47 191.8 207 51.2
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 5.0e-47 191.8 207 51.2
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 5.0e-47 191.8 207 51.2
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 5.0e-47 191.8 205 51.2
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 6.5e-47 191.4 207 51.2
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 1.1e-46 190.7 206 51.0
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 1.9e-46 189.9 203 50.7
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 1.9e-46 189.9 163 58.3
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 2.5e-46 189.5 206 50.0
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 4.2e-46 188.7 208 49.0
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 4.6e-45 185.3 197 52.3
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 7.9e-45 184.5 114 80.7
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 2.3e-44 183.0 203 47.3
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 3.3e-43 179.1 208 49.5
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 4.3e-43 178.7 206 48.1
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 4.3e-43 178.7 206 48.1
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 4.3e-43 178.7 206 48.1
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 5.7e-43 178.3 199 47.7
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 1.3e-42 177.2 198 49.5
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 4.8e-42 175.3 181 53.0
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 1.1e-41 174.1 167 55.1
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 1.0e-39 167.5 208 48.1
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 5.5e-38 161.8 123 62.6
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 9.4e-38 161.0 114 71.1
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 9.4e-38 161.0 234 43.6
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 2.1e-37 159.8 116 70.7
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 1.4e-36 157.1 126 68.3
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 1.8e-36 156.8 191 49.2
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 3.3e-35 152.5 115 67.0
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 7.4e-35 151.4 161 50.9
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 2.6e-32 142.9 119 60.5
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 1.0e-31 141.0 130 56.2
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 5.0e-31 138.7 169 47.3
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 1.5e-27 127.1 152 48.0
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 5.7e-27 125.2 116 60.3
Lalb_Chr13g0302401 Lupinus albus HOM05D005660 ORTHO05D006954 3.5e-24 115.9 87 70.1
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 5.9e-24 115.2 148 45.3
Sopen03g038700 Solanum pennellii HOM05D005660 ORTHO05D006954 1.7e-23 113.6 106 53.8
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.2e-18 96.7 98 61.2
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 1.2e-16 90.9 157 35.0
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 2.5e-14 83.2 158 34.8
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 2.5e-14 83.2 57 68.4
PGSC0003DMG400005618 Solanum tuberosum HOM05D005660 ORTHO05D006954 6.1e-13 78.6 79 53.2
Sabra12G0040800 Salix brachista HOM05D005660 ORTHO05D006954 8.0e-13 78.2 91 49.5
Psat2g093600 Pisum sativum HOM05D001012 ORTHO05D002597 8.3e-10 68.2 119 33.6
Medtr5g047050 Medicago truncatula HOM05D001012 ORTHO05D002597 1.1e-09 67.8 121 34.7
Lj2g0027117 Lotus japonicus HOM05D001012 ORTHO05D002597 4.1e-09 65.9 119 33.6
Ca_05056_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 7.0e-09 65.1 118 33.1
TPR.G38561 Trifolium pratense HOM05D001012 ORTHO05D002597 7.0e-09 65.1 120 33.3
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 1.2e-08 64.3 120 30.8
Actinidia04803 Actinidia chinensis HOM05D001012 ORTHO05D002597 7.7e-08 61.6 146 32.2
Glyma.02G121800 Glycine max HOM05D001012 ORTHO05D002597 1.0e-07 61.2 119 31.1
Lalb_Chr13g0302711 Lupinus albus HOM05D001012 ORTHO05D002597 2.3e-07 60.1 112 33.0
Lalb_Chr17g0341401 Lupinus albus HOM05D001012 ORTHO05D002597 2.3e-07 60.1 118 30.5
arahy.Tifrunner.gnm1.ann1.QD4C18 Arachis hypogaea HOM05D001012 ORTHO05D002597 5.0e-07 58.9 119 33.6
arahy.Tifrunner.gnm1.ann1.WE17ZA Arachis hypogaea HOM05D001012 ORTHO05D002597 5.0e-07 58.9 119 33.6
Eucgr.G02426 Eucalyptus grandis HOM05D001012 ORTHO05D002597 5.0e-07 58.9 118 32.2
Ah.03g138680 Amaranthus hybridus HOM05D001012 ORTHO05D002597 6.6e-07 58.5 124 32.3
Sed0023361 Sechium edule HOM05D001012 ORTHO05D002597 8.6e-07 58.2 119 34.5
ECA246G1989 Erigeron canadensis HOM05D001012 ORTHO05D002597 1.1e-06 57.8 121 30.6
PSO782G1087 Papaver somniferum HOM05D001012 ORTHO05D002597 1.1e-06 57.8 117 29.1
Phvul.003G038900 Phaseolus vulgaris HOM05D001012 ORTHO05D002597 1.1e-06 57.8 120 31.7
RcHm_v2.0_Chr5g0042351 Rosa chinensis HOM05D005660 ORTHO05D006954 1.5e-06 57.4 62 50.0
ATR0827G156 Amborella trichopoda HOM05D001012 ORTHO05D002597 1.9e-06 57.0 104 32.7
CiPaw.11G056400 Carya illinoinensis HOM05D001012 ORTHO05D002597 3.3e-06 56.2 113 37.2
Dinv17453 Davidia involucrata HOM05D001012 ORTHO05D002597 3.3e-06 56.2 142 30.3
Solyc05g012000.3 Solanum lycopersicum HOM05D001012 ORTHO05D002597 3.3e-06 56.2 117 29.1
PGR119G0423 Punica granatum HOM05D001012 ORTHO05D002597 4.3e-06 55.8 118 31.4
Rhsim09G0124600 Rhododendron simsii HOM05D001012 ORTHO05D002597 4.3e-06 55.8 116 28.4
RcHm_v2.0_Chr4g0434591 Rosa chinensis HOM05D005660 ORTHO05D006954 4.3e-06 55.8 41 65.9
arahy.Tifrunner.gnm1.ann1.WLJ197 Arachis hypogaea HOM05D001012 ORTHO05D002597 5.6e-06 55.5 110 33.6
Oeu048130.1 Olea europaea HOM05D001012 ORTHO05D002597 5.6e-06 55.5 117 29.9
SEGI_33553 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 5.6e-06 55.5 121 33.9
VMungo1215G3431 Vigna mungo HOM05D001012 ORTHO05D002597 5.6e-06 55.5 120 30.8
SMO145G0122 Selaginella moellendorffii HOM05D001012 ORTHO05D002597 7.3e-06 55.1 118 33.1
TWI31G0760 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 7.3e-06 55.1 122 32.8
MBI16_g34538_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D002597 9.5e-06 54.7 144 28.5
Sabra10G0108300 Salix brachista HOM05D001012 ORTHO05D002597 9.5e-06 54.7 122 31.1
Sopen06g026700 Solanum pennellii HOM05D001012 ORTHO05D002597 9.5e-06 54.7 142 27.5


User provided reference genes

Program Settings