Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 4.0e-50 201.1 98 100.0
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 3.0e-45 184.9 92 95.7
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 5.0e-40 167.5 94 85.1
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 5.5e-39 164.1 98 80.6
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.2e-38 162.9 98 80.6
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 2.1e-38 162.2 98 78.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 2.7e-38 161.8 86 87.2
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.8e-35 151.8 97 71.1
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 6.3e-35 150.6 89 76.4
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.2e-33 146.4 94 69.1
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.0e-33 145.6 88 78.4
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 5.9e-33 144.1 91 75.8
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.0e-32 143.3 93 68.8
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.0e-32 143.3 87 71.3
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.7e-32 142.5 88 72.7
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 8.5e-32 140.2 88 71.6
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 8.5e-32 140.2 87 70.1
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.9e-31 139.0 87 72.4
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 3.2e-31 138.3 89 74.2
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.2e-31 138.3 100 64.0
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 4.2e-31 137.9 96 64.6
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 7.2e-31 137.1 95 65.3
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 7.2e-31 137.1 87 71.3
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 9.4e-31 136.7 96 67.7
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 9.4e-31 136.7 91 68.1
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.2e-30 136.3 94 70.2
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.6e-30 136.0 77 77.9
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.1e-30 135.6 98 66.3
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 3.6e-30 134.8 95 65.3
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 4.7e-30 134.4 77 77.9
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 4.7e-30 134.4 77 77.9
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 4.7e-30 134.4 82 72.0
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.7e-30 134.4 98 68.4
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 6.1e-30 134.0 98 67.3
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.1e-30 134.0 98 68.4
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 7.9e-30 133.7 87 70.1
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.0e-29 133.3 88 68.2
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.4e-29 132.9 98 64.3
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.4e-29 132.9 93 64.5
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.4e-29 132.9 79 73.4
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.8e-29 132.5 87 69.0
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 2.3e-29 132.1 76 76.3
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.3e-29 132.1 87 69.0
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 2.3e-29 132.1 84 72.6
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 3.0e-29 131.7 83 73.5
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 3.0e-29 131.7 83 73.5
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 3.0e-29 131.7 95 69.5
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 3.9e-29 131.3 81 72.8
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.9e-29 131.3 87 67.8
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.9e-29 131.3 87 67.8
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 5.1e-29 131.0 98 65.3
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 6.7e-29 130.6 97 64.9
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 6.7e-29 130.6 93 68.8
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 6.7e-29 130.6 87 71.3
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 8.8e-29 130.2 89 68.5
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 8.8e-29 130.2 92 64.1
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 8.8e-29 130.2 89 69.7
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.5e-28 129.4 87 70.1
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.5e-28 129.4 87 67.8
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.5e-28 129.4 77 77.9
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 3.3e-28 128.3 90 66.7
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 4.4e-28 127.9 88 67.0
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 4.4e-28 127.9 88 67.0
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 5.7e-28 127.5 96 62.5
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 5.7e-28 127.5 95 65.3
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 7.4e-28 127.1 86 69.8
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 7.4e-28 127.1 89 67.4
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 9.7e-28 126.7 95 65.3
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.7e-27 125.9 94 63.8
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.2e-27 125.6 103 60.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 2.8e-27 125.2 94 62.8
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 2.8e-27 125.2 87 69.0
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 2.8e-27 125.2 87 66.7
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 3.7e-27 124.8 88 67.0
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 4.8e-27 124.4 85 72.9
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.8e-26 122.5 81 67.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.8e-26 122.5 87 65.5
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.4e-26 122.1 88 68.2
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.1e-26 121.7 75 77.3
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 3.1e-26 121.7 81 72.8
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.1e-26 121.7 90 67.8
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 4.1e-26 121.3 93 61.3
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 5.3e-26 120.9 79 73.4
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 5.3e-26 120.9 92 63.0
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 7.0e-26 120.6 87 65.5
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 7.0e-26 120.6 100 58.0
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 7.0e-26 120.6 81 66.7
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 7.0e-26 120.6 93 61.3
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 7.0e-26 120.6 96 59.4
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 9.1e-26 120.2 75 73.3
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.2e-25 119.8 76 69.7
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.0e-25 119.0 96 56.2
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.5e-25 118.2 88 67.0
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 3.5e-25 118.2 76 69.7
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 3.5e-25 118.2 93 63.4
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 5.9e-25 117.5 87 64.4
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 5.9e-25 117.5 88 63.6
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 7.7e-25 117.1 90 61.1
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.0e-24 116.7 102 57.8
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.7e-24 115.9 79 67.1
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.9e-24 115.2 79 65.8
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.8e-24 114.8 95 58.9
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 5.0e-24 114.4 87 63.2
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 8.5e-24 113.6 95 60.0
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 8.5e-24 113.6 77 66.2
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.5e-23 112.8 102 56.9
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 1.9e-23 112.5 83 61.4
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 2.5e-23 112.1 82 63.4
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.5e-23 112.1 82 64.6
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 3.2e-23 111.7 98 58.2
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.2e-23 111.7 86 61.6
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 4.2e-23 111.3 100 57.0
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 5.5e-23 110.9 75 70.7
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 7.2e-23 110.5 88 60.2
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 9.4e-23 110.2 65 75.4
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 9.4e-23 110.2 73 71.2
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.2e-22 109.8 80 65.0
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.6e-22 109.4 92 54.3
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 2.1e-22 109.0 92 55.4
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 2.1e-22 109.0 92 55.4
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 2.7e-22 108.6 65 73.8
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.7e-22 108.6 85 62.4
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.7e-22 108.6 85 62.4
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 8.0e-22 107.1 80 63.8
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.0e-21 106.7 80 60.0
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.0e-21 106.7 71 69.0
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.8e-21 105.9 69 69.6
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.0e-21 105.1 71 67.6
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.5e-20 102.8 79 58.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.6e-20 102.1 66 69.7
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.7e-19 99.4 74 63.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 3.7e-19 98.2 98 52.0
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.1e-18 96.7 73 58.9
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.4e-18 96.3 77 59.7
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.4e-18 96.3 77 59.7
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 2.4e-18 95.5 80 51.2
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 3.1e-18 95.1 93 49.5
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.5e-17 91.7 89 50.6
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.7e-17 90.5 65 63.1
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.3e-16 89.7 85 52.9
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 2.9e-16 88.6 74 55.4
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 8.5e-16 87.0 83 53.0
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-15 86.7 62 67.7
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.5e-15 86.3 56 66.1
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.5e-15 84.3 56 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.4e-15 83.6 74 54.1
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.6e-14 82.8 106 44.3
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.6e-14 82.8 65 58.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-14 82.4 56 67.9
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.8e-13 79.3 61 60.7
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.4e-12 75.1 50 70.0
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 7.5e-12 73.9 44 72.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.7e-11 71.6 63 46.0
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.1e-10 70.1 42 71.4
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 7.0e-10 67.4 57 54.4
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 1.5e-07 59.7 44 65.9
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 5.5e-07 57.8 46 54.3
Cre12.g515150 Chlamydomonas reinhardtii HOM05D004571 ORTHO05D005334 2.1e-06 55.8 67 41.8


User provided reference genes

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