Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 7.5e-56 220.3 114 100.0
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 5.0e-52 207.6 114 93.9
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 8.1e-42 173.7 113 81.4
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 2.0e-40 169.1 114 81.6
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 4.7e-34 147.9 110 70.0
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.3e-33 145.6 110 69.1
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 1.5e-32 142.9 108 69.4
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 9.9e-32 140.2 109 64.2
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.3e-31 139.8 109 65.1
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 1.3e-31 139.8 109 67.9
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.7e-31 139.4 109 64.2
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 8.4e-31 137.1 105 68.6
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 8.4e-31 137.1 110 66.4
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 6.9e-25 117.5 99 61.6
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 8.9e-25 117.1 103 58.3
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.2e-24 116.7 110 56.4
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 2.6e-24 115.5 110 54.5
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.6e-24 115.5 103 58.3
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.3e-23 113.2 107 54.2
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 2.9e-23 112.1 110 51.8
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.4e-22 109.8 99 59.6
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 5.4e-22 107.8 109 52.3
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 5.4e-22 107.8 109 54.1
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 5.4e-22 107.8 98 59.2
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 9.3e-22 107.1 106 54.7
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 9.3e-22 107.1 110 51.8
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 2.1e-21 105.9 105 56.2
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 7.8e-21 104.0 106 56.6
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.3e-20 103.2 107 51.4
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.7e-20 102.8 103 52.4
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.3e-20 102.4 103 51.5
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.3e-20 102.4 103 51.5
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.0e-20 102.1 109 52.3
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 3.0e-20 102.1 107 56.1
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 3.0e-20 102.1 108 50.0
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 6.6e-20 100.9 103 52.4
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 8.7e-20 100.5 108 49.1
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.1e-19 100.1 108 47.2
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.5e-19 99.8 108 49.1
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.9e-19 99.4 119 50.4
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 2.5e-19 99.0 103 49.5
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 4.3e-19 98.2 102 51.0
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.3e-19 98.2 101 51.5
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 4.3e-19 98.2 114 45.6
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 5.6e-19 97.8 99 49.5
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.3e-18 96.7 102 52.9
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 1.3e-18 96.7 103 51.5
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 1.6e-18 96.3 105 48.6
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 2.1e-18 95.9 103 52.4
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 2.1e-18 95.9 110 47.3
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 2.8e-18 95.5 93 55.9
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 3.6e-18 95.1 108 45.4
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 6.2e-18 94.4 107 48.6
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 6.2e-18 94.4 108 45.4
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 8.1e-18 94.0 101 52.5
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.1e-17 93.6 99 51.5
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.4e-17 93.2 107 47.7
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.4e-17 93.2 108 45.4
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 1.4e-17 93.2 112 45.5
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 3.1e-17 92.0 100 50.0
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 4.0e-17 91.7 104 46.2
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 5.3e-17 91.3 102 48.0
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 1.5e-16 89.7 105 47.6
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 2.0e-16 89.4 108 45.4
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 2.6e-16 89.0 107 46.7
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.6e-16 89.0 107 46.7
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 2.6e-16 89.0 106 46.2
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 3.4e-16 88.6 109 47.7
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 3.4e-16 88.6 108 45.4
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 4.5e-16 88.2 93 51.6
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 9.9e-16 87.0 88 50.0
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 4.9e-15 84.7 115 47.0
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 8.4e-15 84.0 96 49.0
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.1e-14 83.6 100 49.0
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 3.2e-14 82.0 98 44.9
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 7.1e-14 80.9 92 48.9
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 7.1e-14 80.9 94 47.9
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.2e-13 80.1 85 43.5
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 2.7e-13 79.0 101 46.5
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 2.7e-13 79.0 109 43.1
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 3.5e-13 78.6 106 45.3
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 6.0e-13 77.8 100 44.0
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 7.9e-13 77.4 107 47.7
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.8e-12 76.3 107 46.7
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 3.9e-12 75.1 112 43.8
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 5.1e-12 74.7 107 46.7
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 5.1e-12 74.7 107 46.7
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 6.7e-12 74.3 107 46.7
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 8.7e-12 73.9 107 45.8
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 3.3e-11 72.0 107 40.2
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 7.4e-11 70.9 108 40.7
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 7.4e-11 70.9 88 42.0
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.6e-10 69.7 114 41.2
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.6e-10 69.7 114 41.2
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.6e-10 69.7 114 41.2
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.8e-10 68.9 129 38.0
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 3.6e-10 68.6 114 39.5
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 4.8e-10 68.2 114 40.4
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.4e-09 66.6 97 42.3
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.8e-09 66.2 97 42.3
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 3.1e-09 65.5 68 48.5
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 5.3e-09 64.7 107 37.4
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 5.3e-09 64.7 93 37.6
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 6.9e-09 64.3 116 37.1
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 6.9e-09 64.3 104 37.5
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 4.5e-08 61.6 101 42.6
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.5e-08 61.6 108 38.0
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 5.8e-08 61.2 108 38.0
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 9.9e-08 60.5 101 41.6
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 9.9e-08 60.5 47 55.3
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 9.9e-08 60.5 87 42.5
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 4.9e-07 58.2 92 35.9
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.1e-06 57.0 76 43.4
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.4e-06 56.6 119 34.5
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 3.2e-06 55.5 80 35.0
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 5.5e-06 54.7 84 40.5
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 7.1e-06 54.3 120 33.3


User provided reference genes

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