Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 1.1e-209 733.4 491 100.0
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.5e-185 653.3 434 92.4
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 8.2e-168 594.3 511 76.3
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.5e-164 583.6 423 78.7
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 2.9e-149 532.7 429 79.0
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 2.9e-141 506.1 435 72.4
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 3.2e-135 486.1 457 69.6
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 3.5e-134 482.6 436 67.9
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.9e-132 476.9 434 73.5
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 8.0e-131 471.5 426 69.7
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 1.7e-128 463.8 433 69.7
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.4e-127 460.7 426 69.5
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.7e-120 437.2 425 65.2
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 5.6e-116 422.2 455 62.9
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 7.3e-116 421.8 448 61.4
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 6.8e-114 415.2 423 64.1
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.3e-112 411.0 436 57.8
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 3.8e-112 409.5 484 53.7
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.9e-111 407.1 439 62.9
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 2.3e-109 400.2 440 61.8
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 5.1e-109 399.1 435 60.7
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.6e-109 398.7 439 55.4
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 2.5e-108 396.7 475 57.7
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.3e-107 394.4 480 56.7
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 2.1e-107 393.7 429 60.1
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 3.6e-107 392.9 440 55.9
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.4e-106 391.0 441 58.5
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.8e-106 390.6 439 54.7
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.6e-105 385.2 440 59.1
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 3.8e-104 382.9 432 59.3
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.8e-104 382.9 454 59.5
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 6.4e-104 382.1 452 59.5
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 1.9e-103 380.6 450 59.1
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.1e-103 378.6 440 60.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.1e-103 378.6 440 60.2
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 6.6e-101 372.1 447 54.4
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 8.7e-101 371.7 447 59.5
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.3e-100 369.4 452 58.4
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 6.2e-99 365.5 380 63.9
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 6.9e-98 362.1 529 49.1
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.7e-96 357.5 439 58.1
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.7e-96 357.5 430 58.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.8e-96 356.3 433 59.6
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.4e-95 354.4 515 54.0
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.2e-94 351.3 411 57.9
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.1e-94 350.5 444 52.0
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 7.9e-94 348.6 449 49.7
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.3e-93 347.8 441 56.5
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 2.3e-93 347.1 427 52.7
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 2.1e-91 340.5 446 53.1
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 2.0e-89 334.0 430 52.3
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.6e-89 333.6 464 55.4
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 3.2e-87 326.6 401 58.9
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 6.0e-86 322.4 461 47.5
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 8.7e-85 318.5 438 46.6
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.3e-84 316.6 439 49.2
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.3e-83 314.7 425 53.9
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 2.1e-83 313.9 419 52.0
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 4.8e-83 312.8 438 46.3
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 8.2e-83 312.0 348 57.5
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.9e-82 308.9 425 48.2
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 5.0e-80 302.8 434 46.1
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 8.4e-80 302.0 426 51.2
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 7.2e-79 298.9 465 52.7
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 2.7e-78 297.0 570 44.0
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.0e-77 295.0 424 46.7
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.8e-77 294.3 412 48.5
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 5.1e-77 292.7 437 47.4
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 6.7e-77 292.4 430 48.6
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.5e-76 291.2 420 47.4
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 4.3e-76 289.7 417 53.5
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 7.4e-76 288.9 437 49.9
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 7.4e-76 288.9 437 47.8
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 2.2e-75 287.3 420 47.6
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.8e-74 284.3 440 50.0
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 5.3e-74 282.7 401 47.6
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 2.6e-73 280.4 428 48.4
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 5.9e-73 279.3 435 44.4
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.7e-72 277.7 445 48.1
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 6.5e-72 275.8 421 49.4
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.6e-70 271.2 419 49.4
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 2.1e-70 270.8 419 49.2
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 2.7e-70 270.4 411 47.4
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 4.6e-70 269.6 434 48.4
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.0e-69 268.5 424 44.1
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.8e-69 267.7 412 44.2
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 1.5e-68 264.6 414 44.2
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.5e-68 263.8 422 46.2
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 9.7e-68 261.9 424 46.2
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 9.7e-68 261.9 425 43.5
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.8e-66 257.7 431 43.6
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 9.1e-66 255.4 427 45.0
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 9.1e-66 255.4 428 42.5
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.5e-65 254.6 401 46.1
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 4.5e-65 253.1 432 44.9
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 2.2e-64 250.8 389 57.6
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 6.5e-64 249.2 261 59.0
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 6.5e-64 249.2 403 45.2
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.9e-63 247.7 370 45.4
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.2e-62 245.0 297 53.5
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 1.6e-62 244.6 317 53.0
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.7e-62 243.8 419 41.5
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 3.6e-62 243.4 421 43.2
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 1.0e-61 241.9 415 44.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.0e-61 241.9 398 48.0
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 1.0e-61 241.9 423 40.2
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.3e-61 240.7 439 45.1
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.0e-61 240.4 420 42.4
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.1e-60 238.4 456 44.1
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 4.8e-59 233.0 443 41.1
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.4e-58 231.5 427 42.6
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.7e-43 180.3 356 44.7
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 4.0e-37 160.2 177 52.5
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 3.7e-35 153.7 271 42.1
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.1e-34 150.6 129 65.1
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 3.6e-30 137.1 480 29.6
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 8.0e-30 136.0 98 70.4
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.0e-29 135.6 425 29.9
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.4e-29 135.2 223 40.8
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 3.4e-28 130.6 183 47.0
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 4.9e-27 126.7 423 35.2
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.1e-26 125.6 112 61.6
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 4.1e-26 123.6 438 30.4
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.0e-26 122.9 401 30.9
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.8e-21 108.2 210 38.6
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 5.8e-20 103.2 100 53.0
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 2.2e-19 101.3 283 31.1
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 6.4e-19 99.8 99 55.6
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 1.2e-17 95.5 66 69.7
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.8e-17 92.8 329 30.1
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.0e-16 92.4 69 66.7
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.0e-13 80.5 69 59.4
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.8e-12 75.9 67 58.2
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 3.7e-11 73.9 133 38.3
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 7.8e-09 66.2 54 57.4
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 1.1e-07 62.4 39 69.2


User provided reference genes

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