Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 2.9e-91 338.6 172 100.0
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 4.0e-77 291.6 177 88.1
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 1.9e-71 272.7 173 85.0
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 1.1e-69 266.9 173 83.2
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 5.8e-60 234.6 169 75.1
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 3.9e-56 221.9 163 73.6
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 3.3e-55 218.8 166 71.7
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 2.8e-54 215.7 167 71.9
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 9.0e-45 184.1 180 60.6
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 1.0e-40 170.6 183 53.0
Ca_16594_v3 Cicer arietinum L. HOM05D007332 ORTHO05D009297 1.3e-40 170.2 144 65.3
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 3.0e-40 169.1 184 52.2
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 6.7e-40 167.9 177 55.4
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 3.3e-39 165.6 187 54.0
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 3.3e-39 165.6 185 49.2
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 5.3e-37 158.3 189 52.4
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 6.9e-37 157.9 210 48.6
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 6.9e-37 157.9 189 48.7
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 1.2e-36 157.1 184 51.6
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 1.5e-36 156.8 174 54.0
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 3.4e-36 155.6 188 49.5
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 4.5e-36 155.2 185 51.9
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 2.2e-35 152.9 156 55.8
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 4.2e-34 148.7 207 44.0
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 2.1e-33 146.4 199 46.7
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 2.7e-33 146.0 155 54.8
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 4.6e-33 145.2 193 51.8
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 7.9e-33 144.4 197 50.3
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 7.9e-33 144.4 197 50.3
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.0e-32 144.1 193 51.3
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 1.1e-31 140.6 194 44.8
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 5.7e-31 138.3 196 42.9
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 5.7e-31 138.3 193 51.3
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 9.7e-31 137.5 196 42.3
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 1.6e-30 136.7 196 42.3
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 4.8e-30 135.2 196 41.8
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 6.3e-30 134.8 206 42.2
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 1.1e-29 134.0 193 49.7
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 5.3e-29 131.7 192 47.9
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 6.9e-29 131.3 163 49.7
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 4.5e-28 128.6 209 44.5
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 4.5e-28 128.6 194 44.8
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 5.9e-28 128.3 181 49.2
Dinv14654 Davidia involucrata HOM05D007332 ORTHO05D009297 1.3e-27 127.1 167 46.1
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 2.9e-27 125.9 190 45.3
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 5.0e-27 125.2 188 44.7
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 1.4e-26 123.6 201 42.8
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 1.4e-26 123.6 194 43.8
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 1.4e-26 123.6 185 44.3
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.9e-26 123.2 175 47.4
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 3.2e-26 122.5 190 45.3
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 3.2e-26 122.5 166 46.4
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 4.2e-26 122.1 175 46.3
MD15G1344600 Malus domestica HOM05D007332 ORTHO05D009297 2.7e-25 119.4 199 44.2
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 4.6e-25 118.6 170 48.2
Hma1.2p1_0542F.1_g175020 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 6.1e-25 118.2 150 47.3
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 6.1e-25 118.2 160 45.0
FAN15G1303 Fragaria x ananassa HOM05D007332 ORTHO05D009297 3.0e-24 115.9 165 46.7
Prupe.1G492300 Prunus persica HOM05D007332 ORTHO05D009297 3.0e-24 115.9 193 42.5
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 3.3e-23 112.5 172 47.1
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 3.1e-21 105.9 176 41.5
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 3.1e-21 105.9 195 39.0
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 3.1e-21 105.9 199 38.2
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 1.2e-20 104.0 174 44.3
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 6.5e-19 98.2 223 35.4
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 3.2e-18 95.9 168 41.7
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 3.2e-18 95.9 182 36.3
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 2.1e-17 93.2 163 42.3
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 2.7e-17 92.8 229 34.1
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 3.6e-17 92.4 228 33.3
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 7.9e-17 91.3 227 33.9
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 7.9e-17 91.3 233 33.5
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 1.0e-16 90.9 173 37.6
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 1.4e-16 90.5 189 38.1
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 1.8e-16 90.1 229 33.2
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 3.0e-16 89.4 237 32.9
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 3.9e-16 89.0 206 35.4
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 3.9e-16 89.0 206 35.4
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 8.8e-16 87.8 226 33.2
Actinidia15225 Actinidia chinensis HOM05D007332 ORTHO05D009297 1.1e-15 87.4 106 50.0
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 2.0e-15 86.7 240 31.7
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 2.6e-15 86.3 233 33.0
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 3.3e-15 85.9 229 31.4
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 3.3e-15 85.9 221 32.6
Lalb_Chr17g0343611 Lupinus albus HOM05D007332 ORTHO05D009297 5.7e-15 85.1 172 40.7
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 9.7e-15 84.3 224 32.1
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 2.8e-14 82.8 216 32.4
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 1.8e-13 80.1 171 35.1
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 3.1e-13 79.3 222 32.0
Sed0015452 Sechium edule HOM05D007332 ORTHO05D009297 3.4e-12 75.9 126 39.7
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 7.7e-12 74.7 228 31.6
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 1.0e-11 74.3 236 30.1
CANSAT25G2745 Cannabis sativa HOM05D007332 ORTHO05D009297 2.5e-10 69.7 174 37.9
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 4.2e-10 68.9 172 33.7
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 4.7e-09 65.5 223 30.0
Aqoxy5G02371 Aquilegia oxysepala HOM05D007332 ORTHO05D009297 2.6e-07 59.7 130 34.6
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 9.7e-07 57.8 190 28.4
Ah.03g139000 Amaranthus hybridus HOM05D007332 ORTHO05D009297 1.3e-06 57.4 163 35.0
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 2.2e-06 56.6 221 28.1
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 3.7e-06 55.8 190 27.4


User provided reference genes

Program Settings