Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 2.5e-160 568.9 326 100.0
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 5.7e-117 424.9 337 81.6
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 2.0e-93 346.7 339 74.3
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 1.3e-81 307.4 339 70.2
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 1.0e-57 228.0 350 57.7
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 2.1e-50 203.8 340 54.7
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 3.3e-48 196.4 334 50.6
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 3.7e-47 193.0 333 53.8
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 6.9e-46 188.7 331 53.8
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 4.5e-45 186.0 325 55.7
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 1.7e-44 184.1 331 48.6
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 3.8e-44 183.0 341 50.1
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 5.0e-44 182.6 329 48.9
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 2.5e-43 180.3 332 47.0
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 6.1e-42 175.6 330 51.8
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 3.9e-41 172.9 332 47.3
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 5.1e-41 172.6 330 50.9
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 6.7e-41 172.2 243 49.8
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 2.4e-38 163.7 337 46.3
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 6.9e-38 162.2 334 45.5
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 9.1e-38 161.8 337 44.2
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 9.1e-38 161.8 337 44.2
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 1.5e-37 161.0 341 49.9
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 2.6e-37 160.2 335 47.8
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 2.2e-36 157.1 334 44.3
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 2.9e-36 156.8 340 43.2
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 1.1e-35 154.8 342 49.1
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 3.2e-35 153.3 326 46.6
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 4.2e-35 152.9 341 48.4
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 1.2e-34 151.4 330 49.7
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 2.1e-34 150.6 346 42.8
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.0e-33 148.3 332 43.7
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 5.1e-33 146.0 343 42.9
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 2.6e-32 143.7 339 46.3
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 4.4e-32 142.9 328 39.6
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 7.4e-32 142.1 351 43.3
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 9.7e-32 141.7 340 46.2
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 3.7e-31 139.8 331 47.1
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 5.9e-29 132.5 346 41.3
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 5.9e-29 132.5 346 41.3
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 5.0e-28 129.4 360 42.5
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 8.5e-28 128.6 344 43.6
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 8.5e-28 128.6 346 38.7
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 1.1e-27 128.3 167 51.5
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 5.5e-27 125.9 334 41.3
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 1.8e-25 120.9 337 43.0
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 3.0e-25 120.2 343 42.3
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 3.9e-25 119.8 241 40.2
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 1.5e-24 117.9 384 34.6
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 4.4e-24 116.3 341 34.0
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 3.7e-23 113.2 351 33.3
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 1.6e-21 107.8 377 32.9
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 7.7e-21 105.5 243 37.9
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 1.0e-20 105.1 353 33.4
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 1.3e-20 104.8 197 45.7
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 2.9e-20 103.6 345 34.5
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 5.0e-20 102.8 357 38.7
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 6.5e-20 102.4 335 32.8
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 8.5e-20 102.1 374 36.6
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.5e-19 101.3 353 36.3
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 5.5e-19 99.4 258 36.0
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 5.5e-19 99.4 351 34.8
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 7.2e-19 99.0 360 40.3
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 7.2e-19 99.0 371 33.4
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 2.1e-18 97.4 332 35.2
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 6.1e-18 95.9 351 34.2
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 8.0e-18 95.5 351 34.2
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 5.2e-17 92.8 263 33.1
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 5.2e-17 92.8 365 35.9
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 1.2e-16 91.7 338 34.0
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 1.2e-16 91.7 338 34.0
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 2.0e-16 90.9 338 34.0
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 2.6e-16 90.5 358 39.9
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 2.8e-15 87.0 338 34.9
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 2.8e-15 87.0 334 31.7
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 4.8e-15 86.3 335 36.4
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 5.3e-14 82.8 338 37.0
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 1.3e-12 78.2 203 35.0
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 2.2e-12 77.4 181 40.3
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 6.5e-12 75.9 232 33.6
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 8.5e-12 75.5 341 39.9
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.9e-11 74.3 188 37.8
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 3.2e-11 73.6 337 37.4
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.0e-09 68.6 234 32.5
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 2.3e-09 67.4 165 35.8
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 1.2e-08 65.1 187 40.6
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 9.8e-08 62.0 420 27.1
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 3.1e-06 57.0 435 32.9


User provided reference genes

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